Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   NX99_RS09640 Genome accession   NZ_CP015282
Coordinates   2056209..2058179 (+) Length   656 a.a.
NCBI ID   WP_060971832.1    Uniprot ID   A0AA45CSQ7
Organism   Streptococcus salivarius strain ATCC 27945     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2051209..2063179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX99_RS09615 (NX99_09460) - 2051927..2052502 (-) 576 WP_022496737.1 CYTH domain-containing protein -
  NX99_RS09620 (NX99_09465) - 2052598..2053272 (+) 675 WP_084915444.1 GTP pyrophosphokinase -
  NX99_RS09625 (NX99_09470) - 2053244..2054080 (+) 837 WP_002884507.1 NAD kinase -
  NX99_RS09630 (NX99_09475) - 2054077..2054973 (+) 897 WP_060971830.1 RluA family pseudouridine synthase -
  NX99_RS09635 (NX99_09480) pta 2054989..2055972 (+) 984 WP_084915446.1 phosphate acetyltransferase -
  NX99_RS09640 (NX99_09485) amiA 2056209..2058179 (+) 1971 WP_060971832.1 peptide ABC transporter substrate-binding protein Regulator
  NX99_RS09645 (NX99_09490) amiA 2058360..2060330 (+) 1971 WP_060971833.1 peptide ABC transporter substrate-binding protein Regulator
  NX99_RS09650 (NX99_09495) amiC 2060391..2061884 (+) 1494 WP_060971834.1 ABC transporter permease Regulator
  NX99_RS09655 (NX99_09500) amiD 2061884..2062810 (+) 927 WP_022496729.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 71864.77 Da        Isoelectric Point: 4.9728

>NTDB_id=178251 NX99_RS09640 WP_060971832.1 2056209..2058179(+) (amiA) [Streptococcus salivarius strain ATCC 27945]
MKKSKWLALAGVALLSVGALAACSSKSSTSGTTYGYVYNSDPESLDYITSNTGPTKTAVTNGVDGLMEADKYGNLVPSVA
EDWSVSQDGLTYTYKIRKGVKWYTSDGEEYADVTAKDFVTGLKHAADSKAGALYLVQDSIAGLSDYLSGANKDFSNVGVK
AIDDHTLQYTLKKPEPYWNSKTTYGLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELTKNENYWDKK
NVHFDAIKLSYYDGSDQEAQERSFSDGALSIARVFPMSSNYASVEKKYKDNIYYTAPGASTAAIGVNIDRQSYKFSAKKT
DAEKTSTKKALLNKDFRQSINFAIDRTAYQSQVNGKDGAALALRNLFVPSDFVSAGDKTFGDLVTDKMSTYGDEWSGVNF
ADGQDGLYNAEKAKTEFAKAKEALQGEGVQFPIHLDLPVDQSSKLNVAQAQSLKQTIEKSLGSENVVIDINQLSSDDMQN
ATLNAANAAAEDWDISNGVVWGPDYQDPSTYLDIFKTTSSENTKTFMGYDDPNNAAAAQVGLKDYDALLDSAASETTDLN
ARYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLTPFTGASMQVGDKNSSDYFKYVKPQEKVVTKKEYEQSREKWLKEK
KASNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=178251 NX99_RS09640 WP_060971832.1 2056209..2058179(+) (amiA) [Streptococcus salivarius strain ATCC 27945]
ATGAAAAAAAGCAAATGGTTAGCCCTTGCGGGTGTGGCACTCCTCAGTGTAGGTGCCTTAGCGGCTTGTTCTTCTAAGTC
AAGTACTAGTGGAACGACTTATGGTTATGTTTATAATTCAGATCCAGAATCATTGGATTACATCACTTCAAATACAGGAC
CTACTAAGACAGCTGTGACAAACGGTGTAGATGGTCTTATGGAAGCAGATAAATATGGAAATCTTGTCCCTTCAGTAGCT
GAAGATTGGTCTGTCTCTCAAGATGGTCTGACTTATACTTATAAAATCCGTAAGGGTGTTAAATGGTACACTTCAGATGG
TGAAGAGTATGCTGATGTGACTGCTAAGGACTTTGTGACTGGTCTTAAGCATGCGGCTGATTCCAAAGCTGGAGCCCTCT
ATTTGGTACAAGATTCTATTGCAGGCTTGTCTGACTACCTCTCTGGTGCCAATAAAGATTTCTCAAATGTAGGTGTCAAA
GCAATCGACGATCACACATTGCAATATACCCTTAAAAAACCAGAACCATACTGGAATTCTAAGACAACCTATGGTTTGCT
CTTCCCGGTTAACGAAGACTTTCTTAAGAATAAAGGAAAAGATTTTGGTAAGTCAACAGACCCAACCTCTATCCTTTATA
ACGGTCCTTTCCTTCTTAAATCTTTGACAGCTAAATCATCTATCGAGTTGACTAAGAATGAGAATTATTGGGATAAGAAG
AACGTGCATTTCGACGCTATCAAATTGTCATATTATGATGGTTCTGACCAGGAGGCTCAAGAGCGTAGCTTCTCAGATGG
TGCTCTCAGCATTGCACGTGTATTCCCTATGAGCTCTAACTATGCGTCAGTAGAAAAGAAATATAAAGATAATATTTATT
ACACAGCACCAGGTGCGTCTACAGCAGCTATTGGTGTGAATATTGATCGTCAAAGCTATAAATTCTCAGCTAAGAAGACA
GATGCTGAAAAGACATCAACTAAGAAGGCTCTTCTAAACAAAGACTTCCGTCAATCAATCAACTTCGCTATTGATCGTAC
AGCTTATCAATCTCAAGTAAATGGTAAAGATGGGGCAGCTCTTGCTCTACGTAACCTCTTTGTTCCTTCTGATTTTGTCA
GTGCAGGTGATAAGACCTTCGGTGACCTTGTGACAGACAAGATGAGCACTTACGGTGATGAATGGTCTGGTGTCAATTTT
GCGGATGGTCAAGATGGTCTCTACAATGCGGAAAAAGCTAAGACTGAGTTTGCCAAAGCCAAAGAAGCTCTTCAAGGTGA
AGGTGTTCAATTCCCAATTCACTTGGACCTTCCAGTTGATCAAAGTTCTAAACTTAATGTTGCTCAAGCTCAATCATTGA
AACAAACGATTGAAAAATCATTGGGCAGTGAAAATGTCGTTATCGATATCAACCAGTTGTCATCTGATGATATGCAAAAT
GCAACCCTTAATGCGGCAAATGCGGCAGCAGAAGACTGGGATATTTCAAACGGTGTGGTTTGGGGTCCAGACTATCAAGA
TCCATCAACTTACCTTGATATCTTTAAGACAACTTCAAGTGAAAATACCAAGACTTTCATGGGTTATGATGATCCAAACA
ATGCGGCCGCAGCTCAAGTAGGTCTTAAAGATTATGATGCCTTGCTTGATTCAGCAGCTTCAGAAACAACAGACCTCAAC
GCTCGTTACGATCGCTATGCCCAAGCTCAAGCATGGTTGGAAGATAGCTCGCTTGTCATTCCATTGACTGTTGGTAACGG
TGCAGCACCAGTTATTTCACGCTTGACACCATTTACGGGTGCTAGCATGCAAGTGGGTGATAAGAACTCATCAGACTACT
TCAAATATGTGAAACCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAAAAG
AAAGCATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

96.189

100

0.962
  amiA3 Streptococcus thermophilus LMG 18311

90.411

100

0.905
  amiA3 Streptococcus thermophilus LMD-9

90.259

100

0.904

Multiple sequence alignment