Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   NX99_RS09655 Genome accession   NZ_CP015282
Coordinates   2061884..2062810 (+) Length   308 a.a.
NCBI ID   WP_022496729.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ATCC 27945     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2056884..2067810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX99_RS09645 (NX99_09490) amiA 2058360..2060330 (+) 1971 WP_060971833.1 peptide ABC transporter substrate-binding protein Regulator
  NX99_RS09650 (NX99_09495) amiC 2060391..2061884 (+) 1494 WP_060971834.1 ABC transporter permease Regulator
  NX99_RS09655 (NX99_09500) amiD 2061884..2062810 (+) 927 WP_022496729.1 oligopeptide ABC transporter permease OppC Regulator
  NX99_RS09660 (NX99_09505) amiE 2062820..2063905 (+) 1086 WP_013990226.1 ABC transporter ATP-binding protein Regulator
  NX99_RS09665 (NX99_09510) amiF 2063898..2064827 (+) 930 WP_014634820.1 ATP-binding cassette domain-containing protein Regulator
  NX99_RS09670 (NX99_09515) - 2064878..2065663 (-) 786 WP_041826692.1 hypothetical protein -
  NX99_RS09675 (NX99_09520) - 2065675..2066373 (-) 699 WP_014634818.1 ABC transporter ATP-binding protein -
  NX99_RS09680 (NX99_09525) - 2066378..2066755 (-) 378 WP_002884206.1 GntR family transcriptional regulator -
  NX99_RS09685 (NX99_09530) - 2066937..2067731 (+) 795 WP_084915448.1 HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34637.76 Da        Isoelectric Point: 9.7054

>NTDB_id=178254 NX99_RS09655 WP_022496729.1 2061884..2062810(+) (amiD) [Streptococcus salivarius strain ATCC 27945]
MASIDKSKFQFVKRDDFASETIDAPAYSYWKSVMRQFFKKKSTTVMLGILIAIILMSFIYPMFSKFDFNDVSKVNDFSVR
YVHPNAQYWFGTDSNGKSLFDSVWFGARNSILIAVIATFINVVIGLVVGAVWGISKTFDMIMMEIYNIISNIPALLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRTLGTPTPKIVVKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLSLFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=178254 NX99_RS09655 WP_022496729.1 2061884..2062810(+) (amiD) [Streptococcus salivarius strain ATCC 27945]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCGCCGGCCTA
TTCATACTGGAAATCGGTGATGCGTCAGTTCTTCAAGAAAAAGTCAACAACTGTCATGTTGGGAATCTTGATTGCTATCA
TTTTGATGAGCTTTATCTACCCAATGTTTTCAAAATTTGACTTTAATGACGTGTCTAAGGTTAATGACTTTAGTGTACGT
TATGTGCATCCAAATGCTCAATACTGGTTCGGTACGGACAGTAATGGTAAGTCTCTCTTTGACAGTGTTTGGTTTGGAGC
TCGTAATTCTATCCTTATTGCTGTTATCGCTACCTTCATTAACGTTGTTATTGGTTTAGTCGTTGGTGCTGTTTGGGGGA
TTTCTAAGACCTTTGATATGATTATGATGGAAATCTACAACATCATCTCAAACATTCCTGCCCTCCTTGTCGTTATCGTC
TTGACTTACTCATTGGGTGCAGGTTTCTGGAACATGATTTTTGCCATGACTGTCACAGGTTGGATTGGTATTGCTTATAC
TATCCGTATTCAAATCATGCGTTACCGTGATTTGGAGTACAACTTGGCTTCTCGTACTTTGGGAACACCAACTCCTAAGA
TTGTGGTTAAAAATATCATGCCACAACTTGTATCAGTTATCGTGACTATGGCTAGTCAGCTCTTGCCAGGATTTATCTCT
TACGAAGCCTTCCTTTCTTACTTTGGTTTGGGGCTTCCTGTTACAACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCTTATCTCTTCTGGATTCCATTGACTACCTTGATCCTCGTTTCCCTCTCTCTCTTTATTG
TCGGTCAAAACTTGGCGGATGCCAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-70)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

99.351

100

0.994
  amiD Streptococcus thermophilus LMG 18311

95.779

100

0.958
  amiD Streptococcus thermophilus LMD-9

95.779

100

0.958

Multiple sequence alignment