Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   NX99_RS09660 Genome accession   NZ_CP015282
Coordinates   2062820..2063905 (+) Length   361 a.a.
NCBI ID   WP_013990226.1    Uniprot ID   A0A1V0H8X8
Organism   Streptococcus salivarius strain ATCC 27945     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 2057820..2068905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX99_RS09645 (NX99_09490) amiA 2058360..2060330 (+) 1971 WP_060971833.1 peptide ABC transporter substrate-binding protein Regulator
  NX99_RS09650 (NX99_09495) amiC 2060391..2061884 (+) 1494 WP_060971834.1 ABC transporter permease Regulator
  NX99_RS09655 (NX99_09500) amiD 2061884..2062810 (+) 927 WP_022496729.1 oligopeptide ABC transporter permease OppC Regulator
  NX99_RS09660 (NX99_09505) amiE 2062820..2063905 (+) 1086 WP_013990226.1 ABC transporter ATP-binding protein Regulator
  NX99_RS09665 (NX99_09510) amiF 2063898..2064827 (+) 930 WP_014634820.1 ATP-binding cassette domain-containing protein Regulator
  NX99_RS09670 (NX99_09515) - 2064878..2065663 (-) 786 WP_041826692.1 hypothetical protein -
  NX99_RS09675 (NX99_09520) - 2065675..2066373 (-) 699 WP_014634818.1 ABC transporter ATP-binding protein -
  NX99_RS09680 (NX99_09525) - 2066378..2066755 (-) 378 WP_002884206.1 GntR family transcriptional regulator -
  NX99_RS09685 (NX99_09530) - 2066937..2067731 (+) 795 WP_084915448.1 HAD-IIB family hydrolase -
  NX99_RS09690 (NX99_09535) - 2067724..2068542 (+) 819 WP_084915450.1 Cof-type HAD-IIB family hydrolase -

Sequence


Protein


Download         Length: 361 a.a.        Molecular weight: 40007.70 Da        Isoelectric Point: 4.6135

>NTDB_id=178255 NX99_RS09660 WP_013990226.1 2062820..2063905(+) (amiE) [Streptococcus salivarius strain ATCC 27945]
MTENKNVILSARDIVVEFDVRDRVLTAIRGVSLDLVEGEVLALVGESGSGKSVLTKTFTGMLEENGRVASGSIDYRGQDL
TKLKSHQDWAPIRGAKIATIFQDPMTSLDPIKTIGSQIVEVIVKHQGKSAKEAKKMAIDYMDKVGIPDAEKRFNEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQIIDLLKSLKEEYGFSVIFITHDLGVVASIADKVAVMYAGEIIE
YATVEEIFYEPCHPYTWSLLSSLPQLADDKGELFSIPGTPPSLYTPVVGDAFALRSDYAMQIDFEEKAPQFQVSDTHWAK
TWLLHEDAPKVEKPEVIQNLHEKIRTNMGFAHLGDEEEGNA

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=178255 NX99_RS09660 WP_013990226.1 2062820..2063905(+) (amiE) [Streptococcus salivarius strain ATCC 27945]
ATGACAGAAAATAAAAATGTAATATTATCGGCTCGCGATATCGTCGTGGAATTTGACGTTCGTGACCGTGTTTTGACAGC
CATTCGAGGAGTTTCCCTTGATCTGGTTGAAGGTGAAGTTTTAGCCTTGGTTGGTGAGTCTGGTTCAGGTAAATCAGTTT
TGACTAAGACTTTCACAGGGATGCTTGAAGAAAATGGTCGTGTAGCTAGCGGTTCTATTGATTATCGTGGCCAAGATTTG
ACCAAACTTAAGAGTCACCAAGATTGGGCACCTATTCGTGGAGCTAAGATCGCGACTATCTTCCAAGATCCTATGACCAG
TCTTGACCCAATTAAGACTATCGGTAGCCAAATTGTTGAAGTCATTGTCAAACACCAAGGAAAATCAGCTAAAGAAGCTA
AAAAAATGGCCATTGATTACATGGACAAGGTTGGTATTCCTGATGCTGAAAAACGTTTCAACGAATATCCTTTCCAATAC
TCTGGTGGGATGCGTCAACGTATCGTCATTGCCATTGCCTTGGCTTGTCGTCCTGATGTCCTTATCTGTGACGAGCCAAC
AACTGCCCTTGACGTAACCATTCAAGCTCAAATCATTGACCTCTTGAAATCACTTAAAGAAGAGTACGGTTTCTCAGTGA
TTTTCATTACCCATGACCTTGGTGTGGTAGCAAGTATCGCTGACAAGGTTGCTGTTATGTATGCTGGTGAAATCATCGAG
TACGCAACTGTTGAGGAAATTTTCTATGAGCCTTGTCACCCATACACTTGGAGCTTGCTTTCAAGCTTGCCACAGTTGGC
TGACGATAAGGGTGAGCTTTTCTCTATTCCAGGGACACCACCATCACTTTATACACCAGTTGTTGGAGATGCCTTTGCCT
TGCGTTCAGACTATGCCATGCAAATTGACTTCGAGGAAAAAGCACCACAATTCCAAGTTTCAGATACTCACTGGGCTAAG
ACCTGGCTCTTACATGAGGATGCACCAAAAGTTGAAAAACCTGAGGTTATCCAAAATCTACATGAAAAAATCCGTACTAA
TATGGGATTTGCACATTTAGGAGATGAGGAGGAAGGCAATGCCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A1V0H8X8

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

99.169

100

0.992

  amiE Streptococcus thermophilus LMG 18311

96.399

100

0.964

  amiE Streptococcus thermophilus LMD-9

96.399

100

0.964

  oppD Streptococcus mutans UA159

54.728

96.676

0.529


Multiple sequence alignment