Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   A4G13_RS06075 Genome accession   NZ_CP015031
Coordinates   1352805..1353155 (-) Length   116 a.a.
NCBI ID   WP_041639938.1    Uniprot ID   -
Organism   Basfia succiniciproducens strain JF4016     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1347805..1358155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4G13_RS06055 (A4G13_06045) serA 1348724..1349956 (-) 1233 WP_011200909.1 phosphoglycerate dehydrogenase -
  A4G13_RS06060 (A4G13_06050) rpiA 1349979..1350638 (-) 660 WP_090656459.1 ribose-5-phosphate isomerase RpiA -
  A4G13_RS06065 (A4G13_06055) hemW 1350895..1352052 (-) 1158 WP_090656462.1 radical SAM family heme chaperone HemW -
  A4G13_RS06070 (A4G13_06060) rdgB 1352064..1352663 (-) 600 WP_090656463.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  A4G13_RS06075 (A4G13_06065) comE1/comEA 1352805..1353155 (-) 351 WP_041639938.1 helix-hairpin-helix domain-containing protein Machinery gene
  A4G13_RS06080 (A4G13_06070) ispH 1353341..1354285 (-) 945 WP_090656466.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  A4G13_RS06085 (A4G13_06075) lspA 1354282..1354776 (-) 495 WP_090656469.1 signal peptidase II -
  A4G13_RS06090 (A4G13_06080) ileS 1354866..1357670 (-) 2805 WP_090656472.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 116 a.a.        Molecular weight: 12341.16 Da        Isoelectric Point: 9.0114

>NTDB_id=176319 A4G13_RS06075 WP_041639938.1 1352805..1353155(-) (comE1/comEA) [Basfia succiniciproducens strain JF4016]
MKLSVRKFLLSCLAAGSLLSAGTAFAADKVPASAETQAIKTSETAKPADNIGNTVNINTATAEEIKQTLIGIGAKKAEAI
IQYREKHGNFTNVEQLLEIQGIGEATLDKNKDRIKL

Nucleotide


Download         Length: 351 bp        

>NTDB_id=176319 A4G13_RS06075 WP_041639938.1 1352805..1353155(-) (comE1/comEA) [Basfia succiniciproducens strain JF4016]
ATGAAATTATCAGTAAGAAAATTTTTGCTTAGTTGCTTAGCCGCCGGTTCGTTATTATCTGCCGGAACTGCATTCGCAGC
TGATAAAGTGCCGGCTTCTGCAGAAACTCAAGCAATAAAAACTTCCGAAACCGCCAAGCCCGCAGATAATATTGGCAATA
CGGTGAATATTAATACGGCAACGGCAGAGGAAATTAAGCAAACTTTAATCGGCATTGGCGCAAAAAAAGCGGAAGCTATT
ATTCAATACCGTGAAAAGCATGGTAATTTTACCAACGTAGAACAATTACTGGAAATACAGGGAATAGGAGAGGCGACTTT
GGATAAAAATAAAGATCGGATAAAATTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(53-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

50.45

95.69

0.483
  comEA/comE1 Glaesserella parasuis strain SC1401

54.167

82.759

0.448
  comEA Vibrio cholerae C6706

43.75

96.552

0.422
  comEA Vibrio cholerae strain A1552

43.75

96.552

0.422
  comEA Acinetobacter baylyi ADP1

35.433

100

0.388

Multiple sequence alignment