Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   A2G56_RS02680 Genome accession   NZ_CP014835
Coordinates   584263..585105 (-) Length   280 a.a.
NCBI ID   WP_062708668.1    Uniprot ID   -
Organism   Streptococcus halotolerans strain HTS9     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 579263..590105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2G56_RS02670 trmFO 579890..581233 (-) 1344 WP_062708662.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  A2G56_RS02675 topA 582005..584140 (-) 2136 WP_062708665.1 type I DNA topoisomerase -
  A2G56_RS02680 dprA 584263..585105 (-) 843 WP_062708668.1 DNA-processing protein DprA Machinery gene
  A2G56_RS02685 aroD 585476..586228 (-) 753 WP_062708671.1 type I 3-dehydroquinate dehydratase -
  A2G56_RS02690 - 586246..587442 (-) 1197 WP_062708674.1 MFS transporter -
  A2G56_RS02695 - 587456..588328 (-) 873 WP_062708675.1 shikimate dehydrogenase -
  A2G56_RS02700 - 588352..589560 (-) 1209 WP_062708678.1 MFS transporter -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 31286.29 Da        Isoelectric Point: 7.6762

>NTDB_id=174457 A2G56_RS02680 WP_062708668.1 584263..585105(-) (dprA) [Streptococcus halotolerans strain HTS9]
MNNFELYKLKKAGLKNQHILNILDYEAKYQKSLSLRDRAVVSKCQNPVVFIEHYKALDSKTLRQEFLTFPSISILDDEYP
LELKEIYNPPVLLFYKGNIELLEKAKLAVVGARKCSDIGTKSVHKIITELENRFVIVSGLARGIDTAAHLSALKMGGASI
GVIGTGLDVYYPKENQRLQDFMMQNHLVLSEYGPGEQPLKYHFPERNRIIAGLCQGIVVAEAKLRSGSLITCERALEEGR
DVFALPGNILDGKSSGCLHLIQEGAKCIISGFDIINDYQL

Nucleotide


Download         Length: 843 bp        

>NTDB_id=174457 A2G56_RS02680 WP_062708668.1 584263..585105(-) (dprA) [Streptococcus halotolerans strain HTS9]
ATGAATAATTTCGAATTGTACAAACTAAAAAAAGCTGGCTTAAAGAACCAGCACATTTTAAATATCTTAGACTATGAAGC
CAAATACCAAAAATCCTTGTCTCTGAGAGATCGAGCAGTGGTTTCTAAATGTCAGAATCCTGTTGTCTTTATAGAGCATT
ACAAGGCATTAGATAGTAAAACACTACGACAAGAATTTTTAACATTTCCTAGTATTTCTATACTAGATGATGAATACCCA
TTAGAACTCAAGGAAATCTATAATCCTCCAGTTCTTCTATTCTATAAAGGAAATATTGAACTACTGGAAAAAGCTAAATT
AGCGGTGGTAGGTGCTCGAAAATGCAGTGACATTGGAACAAAATCTGTTCATAAAATTATTACGGAATTAGAAAATCGTT
TTGTGATTGTTAGTGGGCTAGCGCGTGGCATTGATACAGCAGCTCATCTATCTGCTTTGAAAATGGGTGGCGCTAGCATC
GGAGTGATAGGAACGGGGCTAGATGTCTATTATCCTAAAGAAAATCAACGCTTACAGGATTTCATGATGCAAAATCATTT
AGTTCTTTCAGAGTATGGACCAGGTGAGCAGCCGCTTAAGTATCACTTTCCAGAGAGAAATCGTATTATTGCAGGACTGT
GCCAAGGCATTGTTGTGGCCGAGGCCAAATTGCGATCGGGGAGTTTGATTACTTGTGAGCGTGCATTAGAAGAAGGAAGA
GATGTTTTTGCCCTTCCTGGTAATATTTTAGATGGGAAATCATCTGGTTGCTTACACTTGATACAAGAGGGTGCCAAGTG
CATTATATCAGGATTTGACATCATTAATGACTATCAACTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-269)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

71.786

100

0.718
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

64.286

100

0.643
  dprA/cilB/dalA Streptococcus pneumoniae D39

64.286

100

0.643
  dprA/cilB/dalA Streptococcus pneumoniae R6

64.286

100

0.643
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

64.286

100

0.643
  dprA/cilB/dalA Streptococcus mitis SK321

64.286

100

0.643
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

63.929

100

0.639
  dprA Lactococcus lactis subsp. cremoris KW2

58.633

99.286

0.582
  dprA Staphylococcus aureus N315

41.803

87.143

0.364

Multiple sequence alignment