Detailed information
Bioinformatically predicted
Overview
| Name | comEA/comE1 | Type | Machinery gene |
| Locus tag | WM43_RS08965 | Genome accession | NZ_CP014774 |
| Coordinates | 2013251..2013571 (+) | Length | 106 a.a. |
| NCBI ID | WP_064338737.1 | Uniprot ID | - |
| Organism | Aeromonas veronii strain AVNIH1 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2008251..2018571
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WM43_RS08950 (WM43_08945) | yfbV | 2008689..2009129 (-) | 441 | WP_005339116.1 | terminus macrodomain insulation protein YfbV | - |
| WM43_RS08955 (WM43_08950) | - | 2009434..2010636 (+) | 1203 | WP_005349210.1 | acetate kinase | - |
| WM43_RS08960 (WM43_08955) | pta | 2010691..2012871 (+) | 2181 | WP_005339119.1 | phosphate acetyltransferase | - |
| WM43_RS08965 (WM43_08960) | comEA/comE1 | 2013251..2013571 (+) | 321 | WP_064338737.1 | ComEA family DNA-binding protein | Machinery gene |
| WM43_RS08970 (WM43_08965) | galU | 2013668..2014579 (+) | 912 | WP_064338738.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| WM43_RS08975 (WM43_08970) | - | 2014793..2016190 (+) | 1398 | WP_064338739.1 | peptide MFS transporter | - |
| WM43_RS08980 (WM43_08975) | - | 2016264..2017235 (-) | 972 | WP_064338740.1 | response regulator | - |
| WM43_RS08985 (WM43_08980) | - | 2017476..2018174 (+) | 699 | WP_064338741.1 | DnaT-like ssDNA-binding domain-containing protein | - |
Sequence
Protein
Download Length: 106 a.a. Molecular weight: 11300.30 Da Isoelectric Point: 9.6564
>NTDB_id=173790 WM43_RS08965 WP_064338737.1 2013251..2013571(+) (comEA/comE1) [Aeromonas veronii strain AVNIH1]
MLMKKLSAVMLLACLPLFSQPVLATDKVAPKQTTTAAVAKEDGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK
MLMKKLSAVMLLACLPLFSQPVLATDKVAPKQTTTAAVAKEDGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK
Nucleotide
Download Length: 321 bp
>NTDB_id=173790 WM43_RS08965 WP_064338737.1 2013251..2013571(+) (comEA/comE1) [Aeromonas veronii strain AVNIH1]
ATGCTGATGAAGAAACTCTCTGCAGTCATGCTGCTGGCCTGCTTGCCCCTGTTCAGCCAACCCGTGCTGGCCACAGATAA
GGTAGCGCCCAAGCAAACAACCACGGCCGCGGTCGCCAAGGAGGACGGCAAACTGAATATCAATACCGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGCGACAAGAAGGCACAGGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCGGATGTCAATGGCATTGGCCCGGCCACGCTGGAAGCCAATCGTGACATGATCATCGTCAAATA
A
ATGCTGATGAAGAAACTCTCTGCAGTCATGCTGCTGGCCTGCTTGCCCCTGTTCAGCCAACCCGTGCTGGCCACAGATAA
GGTAGCGCCCAAGCAAACAACCACGGCCGCGGTCGCCAAGGAGGACGGCAAACTGAATATCAATACCGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGCGACAAGAAGGCACAGGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCGGATGTCAATGGCATTGGCCCGGCCACGCTGGAAGCCAATCGTGACATGATCATCGTCAAATA
A
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
48.673 |
100 |
0.519 |
| comEA | Vibrio cholerae C6706 |
46.667 |
99.057 |
0.462 |
| comEA | Vibrio cholerae strain A1552 |
46.667 |
99.057 |
0.462 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
43.299 |
91.509 |
0.396 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
66.129 |
58.491 |
0.387 |
| comEA | Legionella pneumophila str. Paris |
39.394 |
93.396 |
0.368 |
| comEA | Legionella pneumophila strain ERS1305867 |
39.394 |
93.396 |
0.368 |