Detailed information
Bioinformatically predicted
Overview
| Name | comYF | Type | Machinery gene |
| Locus tag | A0O21_RS10370 | Genome accession | NZ_CP014699 |
| Coordinates | 2210197..2210631 (+) | Length | 144 a.a. |
| NCBI ID | WP_067065306.1 | Uniprot ID | A0A172QAP2 |
| Organism | Streptococcus pantholopis strain TA 26 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2205197..2215631
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A0O21_RS10355 (A0O21_10355) | - | 2207837..2208184 (+) | 348 | WP_067064904.1 | DUF1033 family protein | - |
| A0O21_RS10360 (A0O21_10360) | comYA | 2208267..2209208 (+) | 942 | WP_067064906.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| A0O21_RS10365 (A0O21_10365) | comYB | 2209090..2210175 (+) | 1086 | WP_418346445.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| A0O21_RS10370 (A0O21_10370) | comYF | 2210197..2210631 (+) | 435 | WP_067065306.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| A0O21_RS10375 (A0O21_10375) | comGG | 2210660..2210986 (+) | 327 | WP_227806873.1 | competence type IV pilus minor pilin ComGG | - |
| A0O21_RS10380 (A0O21_10380) | comYH | 2211205..2212161 (+) | 957 | WP_067064916.1 | class I SAM-dependent methyltransferase | Machinery gene |
| A0O21_RS10385 (A0O21_10385) | - | 2212213..2213406 (+) | 1194 | WP_067064918.1 | acetate kinase | - |
| A0O21_RS10390 (A0O21_10390) | proC | 2213581..2214351 (-) | 771 | WP_067064920.1 | pyrroline-5-carboxylate reductase | - |
Sequence
Protein
Download Length: 144 a.a. Molecular weight: 16192.45 Da Isoelectric Point: 8.0736
>NTDB_id=173385 A0O21_RS10370 WP_067065306.1 2210197..2210631(+) (comYF) [Streptococcus pantholopis strain TA 26]
MKKSKAAAFTLLECLIALLVISGSVLVYEALTASVMANVHYLSDNYQENWLLFSQQLYTELEGSHLDKVEHNKLYISRDG
QKLALGKSKSDDFRKTHADGRGYQPMLYGVESSQISQNGHIVTINLTFKNGLKRSFVYAFAHES
MKKSKAAAFTLLECLIALLVISGSVLVYEALTASVMANVHYLSDNYQENWLLFSQQLYTELEGSHLDKVEHNKLYISRDG
QKLALGKSKSDDFRKTHADGRGYQPMLYGVESSQISQNGHIVTINLTFKNGLKRSFVYAFAHES
Nucleotide
Download Length: 435 bp
>NTDB_id=173385 A0O21_RS10370 WP_067065306.1 2210197..2210631(+) (comYF) [Streptococcus pantholopis strain TA 26]
ATCAAAAAGAGTAAAGCAGCCGCTTTTACTCTGCTGGAATGTCTAATAGCTCTTTTGGTCATATCGGGGTCTGTTCTTGT
TTATGAAGCTTTGACGGCCTCGGTGATGGCAAATGTTCATTACTTATCTGATAATTATCAAGAAAACTGGCTTTTATTCT
CGCAGCAATTGTATACAGAATTGGAAGGCAGCCATTTAGATAAAGTTGAACACAATAAATTGTATATAAGTCGGGACGGA
CAGAAGCTGGCTTTAGGAAAATCCAAGTCTGATGATTTTAGGAAGACACATGCGGACGGACGCGGTTATCAGCCTATGCT
TTATGGTGTAGAAAGCAGTCAGATCAGCCAAAATGGCCATATTGTTACAATAAACTTGACTTTTAAAAATGGTTTAAAAA
GGAGCTTTGTCTATGCTTTTGCGCACGAAAGTTAA
ATCAAAAAGAGTAAAGCAGCCGCTTTTACTCTGCTGGAATGTCTAATAGCTCTTTTGGTCATATCGGGGTCTGTTCTTGT
TTATGAAGCTTTGACGGCCTCGGTGATGGCAAATGTTCATTACTTATCTGATAATTATCAAGAAAACTGGCTTTTATTCT
CGCAGCAATTGTATACAGAATTGGAAGGCAGCCATTTAGATAAAGTTGAACACAATAAATTGTATATAAGTCGGGACGGA
CAGAAGCTGGCTTTAGGAAAATCCAAGTCTGATGATTTTAGGAAGACACATGCGGACGGACGCGGTTATCAGCCTATGCT
TTATGGTGTAGAAAGCAGTCAGATCAGCCAAAATGGCCATATTGTTACAATAAACTTGACTTTTAAAAATGGTTTAAAAA
GGAGCTTTGTCTATGCTTTTGCGCACGAAAGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYF | Streptococcus mutans UA159 |
60.14 |
99.306 |
0.597 |
| comYF | Streptococcus mutans UA140 |
59.441 |
99.306 |
0.59 |
| comGF/cglF | Streptococcus pneumoniae D39 |
48.592 |
98.611 |
0.479 |
| comGF/cglF | Streptococcus pneumoniae Rx1 |
48.592 |
98.611 |
0.479 |
| comGF/cglF | Streptococcus pneumoniae R6 |
48.592 |
98.611 |
0.479 |
| comGF/cglF | Streptococcus pneumoniae TIGR4 |
48.592 |
98.611 |
0.479 |
| comGF/cglF | Streptococcus mitis NCTC 12261 |
50.365 |
95.139 |
0.479 |
| comGF/cglF | Streptococcus mitis SK321 |
48.905 |
95.139 |
0.465 |
| comGF | Lactococcus lactis subsp. cremoris KW2 |
42.857 |
97.222 |
0.417 |