Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AC731_RS16645 Genome accession   NZ_CP014646
Coordinates   3579541..3580575 (-) Length   344 a.a.
NCBI ID   WP_004259809.1    Uniprot ID   A0A127K8X7
Organism   Thauera humireducens strain SgZ-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3574541..3585575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AC731_RS16615 (AC731_016615) hprK 3575023..3575970 (-) 948 WP_004259797.1 HPr(Ser) kinase/phosphatase -
  AC731_RS16620 (AC731_016620) ptsN 3575939..3576424 (-) 486 WP_048707786.1 PTS IIA-like nitrogen regulatory protein PtsN -
  AC731_RS16625 (AC731_016625) hpf 3576561..3576884 (-) 324 WP_004259801.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  AC731_RS16630 (AC731_016630) rpoN/rpoN1 3576902..3578362 (-) 1461 WP_048707789.1 RNA polymerase factor sigma-54 Machinery gene
  AC731_RS16635 (AC731_016635) lptB 3578370..3579092 (-) 723 WP_004259805.1 LPS export ABC transporter ATP-binding protein -
  AC731_RS16640 (AC731_016640) recX 3579079..3579528 (-) 450 WP_048707792.1 recombination regulator RecX -
  AC731_RS16645 (AC731_016645) recA 3579541..3580575 (-) 1035 WP_004259809.1 recombinase RecA Machinery gene
  AC731_RS16650 (AC731_016650) - 3580709..3581194 (-) 486 WP_048707796.1 CinA family protein -
  AC731_RS16655 (AC731_016655) - 3581214..3581696 (-) 483 WP_004259814.1 phosphatidylglycerophosphatase A -
  AC731_RS16660 (AC731_016660) thiL 3581806..3582765 (-) 960 WP_048707797.1 thiamine-phosphate kinase -
  AC731_RS16665 (AC731_016665) ubiT 3582920..3583465 (-) 546 WP_048707799.1 ubiquinone anaerobic biosynthesis accessory factor UbiT -
  AC731_RS16670 (AC731_016670) - 3583568..3584479 (-) 912 WP_048707800.1 U32 family peptidase -
  AC731_RS16675 (AC731_016675) ubiU 3584534..3585547 (-) 1014 WP_004259838.1 ubiquinone anaerobic biosynthesis protein UbiU -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36786.17 Da        Isoelectric Point: 5.8839

>NTDB_id=172979 AC731_RS16645 WP_004259809.1 3579541..3580575(-) (recA) [Thauera humireducens strain SgZ-1]
MDDNKAKALAAALSQIEKQFGKGSIMRMGDGNVERDIQTVSTGSLGLDIALGLGGLPRGRVVEIYGPESSGKTTLTLQVI
AEMQKLGGTAAFIDAEHALDVGYAEKLGVNIQDLLISQPDTGEQALEIADMLVRSGGVDVVVVDSVAALTPKAEIEGEMG
DQLPGLQARLMSQALRKLTANIKRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRTGTIKKGDEVVGS
ETRVKVVKNKVSPPFKEAHFDILYGEGISREGEIIDLGVDHKIVDKSGAWYAYKGDKIGQGKDNSREFLRNNPALAREIE
NRVRVAVGLPEMPPATPAAAAAEA

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=172979 AC731_RS16645 WP_004259809.1 3579541..3580575(-) (recA) [Thauera humireducens strain SgZ-1]
ATGGACGACAACAAGGCCAAGGCGCTCGCCGCTGCGCTCTCGCAGATCGAAAAGCAGTTCGGCAAGGGCTCGATCATGCG
CATGGGCGACGGCAACGTCGAACGCGACATCCAGACCGTGTCCACCGGCTCGCTCGGGCTCGACATCGCACTCGGCCTCG
GCGGCCTGCCGCGCGGTCGTGTGGTCGAGATCTACGGCCCGGAATCATCCGGCAAGACCACGCTGACGCTGCAGGTCATC
GCCGAGATGCAGAAGCTCGGCGGCACCGCCGCGTTCATCGACGCCGAACATGCGCTCGACGTCGGCTATGCCGAAAAGCT
CGGCGTCAACATCCAGGACCTGCTGATCTCCCAGCCCGACACCGGCGAACAGGCGCTCGAGATCGCCGACATGCTGGTGC
GCTCGGGCGGCGTGGACGTGGTCGTGGTCGACTCGGTCGCCGCGCTGACGCCCAAGGCCGAAATTGAAGGCGAGATGGGC
GACCAGCTGCCCGGCCTGCAGGCCCGCCTGATGTCGCAGGCGCTGCGCAAGCTCACCGCCAACATCAAGCGCACCAACAC
GCTGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAGACCACCACCGGCGGCAACG
CGCTCAAGTTCTACGCCTCGGTGCGCATGGACATCCGCCGCACCGGCACGATCAAGAAGGGCGACGAGGTCGTCGGGTCC
GAGACCCGCGTCAAGGTGGTGAAGAACAAGGTCTCGCCCCCGTTCAAGGAAGCGCACTTCGACATCCTGTACGGCGAGGG
CATCTCGCGCGAAGGCGAGATCATCGATCTCGGCGTCGACCACAAGATCGTCGACAAGTCCGGCGCCTGGTACGCCTACA
AGGGCGACAAGATCGGCCAGGGCAAGGACAACTCGCGCGAGTTCCTGCGCAACAACCCTGCGCTGGCGCGCGAGATCGAG
AACAGGGTCCGCGTCGCGGTCGGTCTGCCTGAAATGCCGCCGGCGACGCCCGCTGCGGCAGCCGCCGAGGCCTGA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

80.488

95.349

0.767
  recA Pseudomonas stutzeri DSM 10701

75.926

94.186

0.715
  recA Vibrio cholerae strain A1552

72.205

96.221

0.695
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.205

96.221

0.695
  recA Acinetobacter baylyi ADP1

72.84

94.186

0.686
  recA Neisseria gonorrhoeae MS11

71.429

95.64

0.683
  recA Neisseria gonorrhoeae MS11

71.429

95.64

0.683
  recA Neisseria gonorrhoeae strain FA1090

71.429

95.64

0.683
  recA Acinetobacter baumannii D1279779

72.531

94.186

0.683
  recA Glaesserella parasuis strain SC1401

70.807

93.605

0.663
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.768

95.349

0.637
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.465

96.802

0.634
  recA Helicobacter pylori strain NCTC11637

63.343

99.128

0.628
  recA Helicobacter pylori 26695

63.343

99.128

0.628
  recA Bacillus subtilis subsp. subtilis str. 168

64.438

95.64

0.616
  recA Latilactobacillus sakei subsp. sakei 23K

61.934

96.221

0.596
  recA Streptococcus mitis SK321

61.702

95.64

0.59
  recA Streptococcus mitis NCTC 12261

61.702

95.64

0.59
  recA Streptococcus mutans UA159

60.661

96.802

0.587
  recA Streptococcus pneumoniae R6

61.398

95.64

0.587
  recA Streptococcus pneumoniae Rx1

61.398

95.64

0.587
  recA Streptococcus pneumoniae D39

61.398

95.64

0.587
  recA Streptococcus pneumoniae TIGR4

61.398

95.64

0.587
  recA Streptococcus pyogenes NZ131

60.303

95.93

0.578
  recA Lactococcus lactis subsp. cremoris KW2

59.633

95.058

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.877

94.186

0.564

Multiple sequence alignment