Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/celB   Type   Machinery gene
Locus tag   AXE83_RS06560 Genome accession   NZ_CP014264
Coordinates   1395657..1397876 (-) Length   739 a.a.
NCBI ID   WP_060955852.1    Uniprot ID   A0A0X8JYK5
Organism   Streptococcus sp. oral taxon 431 strain F0610 (5-114)     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1390657..1402876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXE83_RS06530 (AXE83_06530) - 1391691..1392227 (-) 537 WP_060955847.1 F0F1 ATP synthase subunit delta -
  AXE83_RS06535 (AXE83_06535) atpF 1392227..1392721 (-) 495 WP_060955848.1 F0F1 ATP synthase subunit B -
  AXE83_RS06540 (AXE83_06540) atpB 1392740..1393456 (-) 717 WP_060955849.1 F0F1 ATP synthase subunit A -
  AXE83_RS06545 (AXE83_06545) - 1393489..1393689 (-) 201 WP_001054551.1 F0F1 ATP synthase subunit C -
  AXE83_RS06550 (AXE83_06550) - 1393919..1394230 (-) 312 WP_060955850.1 CHY zinc finger protein -
  AXE83_RS06555 (AXE83_06555) - 1394245..1395531 (-) 1287 WP_060955851.1 U32 family peptidase -
  AXE83_RS06560 (AXE83_06560) comEC/celB 1395657..1397876 (-) 2220 WP_060955852.1 ComEC/Rec2 family competence protein Machinery gene
  AXE83_RS06565 (AXE83_06565) comEA/celA/cilE 1397860..1398501 (-) 642 WP_049528175.1 helix-hairpin-helix domain-containing protein Machinery gene
  AXE83_RS06570 (AXE83_06570) - 1398567..1399136 (-) 570 WP_049528167.1 GNAT family N-acetyltransferase -
  AXE83_RS06575 (AXE83_06575) ald 1399305..1400417 (+) 1113 WP_049528166.1 alanine dehydrogenase -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 84744.59 Da        Isoelectric Point: 9.5077

>NTDB_id=170003 AXE83_RS06560 WP_060955852.1 1395657..1397876(-) (comEC/celB) [Streptococcus sp. oral taxon 431 strain F0610 (5-114)]
MLQWISRFPIPKIYLSFLLLWLYYAIFSASVLALLGFVFLLVCLFFQFPWKTVTKVLLICSIFGSWFIFQKWQQEEASRN
LVDTVDTLRILPDTIKVNGDSLSFRGKADGRLFQVYYKLQSEAEKEKFQDLSELHEMVVKGKLASPQGASNFAGFDYRNY
LKTQGIYQTLTISEIVELKQIFSWGIGENLSSLRRKAVVWIKRNFPDPMRNYMTGLLLGHLDTDFEEMNELYSSLGIIHL
FALSGMQVGFFMNAFKKSLLRLGLTQEKFKWLAYPFSLFYAGLTGFSASVIRSLLQKLLAQHGFKSLDNFALTILILFLI
MPNFFLTAGGVLSCAYAFILTMTGEEVAGIKGLVRESCIISLGILPILSFYFSEFQPWSILLTFVFSFLFDMVLLPLLSI
IFCLSFIYPITQFNFLFEWLENIIRYISQLSTRPLVFGQPSLWILILLLITLALIYDYRKNLKKISMLGIVAISFFLVTK
HPLENELTVLDMERGRSIFLRDLTGKTILLDVGEKSEVEKKEAWQEKVTTSNAKRSLIPYLKSRGVAKIDQLVLTTSDTK
QLDHVLEISKAFELGEILVTEETLSKREFMDKLKESKVKVVAIKTGQQLPIFGSSLEVIATQNKDKNDSITMYGKLLNQT
FLVTGNIEEKFLTSYYPKLQADVVITHQQVSNKKTDIEIFKTVHPKITVISIDKKKSFKVKNGENNQEDKELENLVLKTD
KKGAIRFKGWTTWNVETVQ

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=170003 AXE83_RS06560 WP_060955852.1 1395657..1397876(-) (comEC/celB) [Streptococcus sp. oral taxon 431 strain F0610 (5-114)]
ATGTTACAGTGGATTAGTCGCTTTCCAATTCCAAAAATCTATCTCAGTTTTCTTTTGCTATGGCTCTACTATGCTATCTT
TTCAGCGAGTGTCTTAGCACTTTTGGGCTTTGTCTTTTTACTAGTCTGCCTCTTTTTCCAATTTCCATGGAAAACTGTGA
CCAAGGTCCTCTTGATTTGCAGCATATTTGGGAGTTGGTTTATTTTTCAAAAATGGCAGCAAGAAGAAGCCAGTCGGAAT
CTTGTAGACACGGTTGATACATTGAGAATATTACCGGATACCATCAAAGTAAATGGTGATAGCTTATCTTTTCGTGGCAA
GGCTGACGGTAGACTCTTTCAGGTCTATTATAAACTTCAGTCAGAAGCTGAAAAGGAAAAATTTCAAGACTTATCTGAAC
TACATGAAATGGTTGTGAAAGGCAAGTTAGCTAGTCCTCAAGGAGCCAGTAATTTTGCGGGTTTCGATTATCGAAATTAT
CTCAAAACACAAGGAATTTATCAGACCTTGACTATATCCGAAATTGTGGAATTAAAGCAAATTTTCAGTTGGGGTATTGG
AGAAAATCTATCAAGTTTGAGGAGAAAAGCAGTTGTCTGGATTAAAAGGAATTTTCCCGATCCCATGCGCAACTATATGA
CCGGTCTTTTATTGGGGCATTTGGACACAGACTTTGAGGAAATGAATGAACTTTATTCCAGCCTAGGGATTATTCATCTT
TTTGCTTTGTCTGGAATGCAGGTCGGATTTTTCATGAATGCTTTTAAAAAGTCACTCTTGCGATTGGGCTTGACACAAGA
GAAGTTCAAATGGCTAGCTTATCCCTTTTCTTTGTTTTATGCAGGCTTGACAGGATTTTCAGCTTCAGTTATTCGTAGTC
TTCTACAAAAGTTATTGGCTCAGCATGGCTTTAAGTCACTGGATAATTTTGCTTTGACGATTCTTATTCTATTTCTTATC
ATGCCGAACTTTTTCTTAACTGCTGGGGGAGTTCTTTCCTGTGCTTATGCCTTTATCCTGACAATGACTGGTGAGGAAGT
AGCAGGGATAAAAGGTCTGGTTAGAGAGAGTTGCATTATTTCTTTGGGAATTTTGCCAATTTTATCATTTTATTTTTCAG
AATTTCAACCGTGGTCCATTCTCTTGACATTTGTCTTTTCATTCTTGTTTGACATGGTCCTATTGCCACTTTTATCGATT
ATCTTCTGTCTGTCATTTATATATCCCATCACCCAGTTCAACTTTCTCTTTGAATGGCTTGAAAACATCATTCGCTATAT
TTCTCAGCTATCTACGAGGCCACTTGTTTTTGGACAGCCGAGTCTTTGGATTTTAATCCTTCTTTTGATTACTTTAGCTC
TCATCTATGACTATCGAAAGAATTTGAAAAAAATATCTATGCTTGGCATAGTTGCCATCTCGTTCTTTTTAGTTACCAAA
CATCCACTGGAAAATGAACTAACGGTCTTAGATATGGAGCGGGGGCGAAGCATTTTCCTAAGAGACCTGACAGGCAAGAC
CATTCTACTGGATGTCGGAGAGAAGTCTGAAGTTGAAAAGAAAGAAGCATGGCAGGAGAAAGTCACCACGAGCAATGCCA
AACGTAGCTTAATCCCTTATCTAAAAAGTAGAGGAGTCGCCAAGATTGATCAGCTGGTTCTAACGACTAGTGATACTAAG
CAGTTAGATCATGTGTTAGAAATCAGTAAAGCCTTCGAGCTTGGAGAGATTCTAGTAACTGAAGAAACTTTATCTAAGAG
AGAATTTATGGATAAGCTGAAGGAAAGCAAAGTCAAGGTAGTTGCCATCAAAACTGGACAGCAGTTACCTATTTTTGGAA
GTAGTTTAGAAGTAATCGCAACTCAAAATAAGGATAAAAATGATTCAATTACAATGTATGGAAAGTTACTAAACCAAACC
TTTCTAGTTACTGGAAATATCGAGGAGAAGTTTTTAACGAGCTATTATCCAAAACTCCAAGCAGATGTAGTGATAACTCA
TCAGCAAGTATCAAATAAAAAAACAGATATCGAAATCTTCAAAACTGTACACCCTAAAATCACGGTTATTTCAATAGACA
AGAAAAAATCATTTAAAGTTAAAAATGGGGAGAATAACCAAGAAGATAAAGAACTTGAGAATTTGGTATTAAAAACTGAC
AAAAAGGGCGCCATTCGTTTCAAGGGATGGACTACTTGGAATGTTGAAACTGTTCAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(216-459)

Domain of unknown function (DUF4131) (DUF4131)

(28-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0X8JYK5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/celB Streptococcus mitis NCTC 12261

66.309

100

0.668
  comEC/celB Streptococcus pneumoniae Rx1

66.086

100

0.667
  comEC/celB Streptococcus pneumoniae D39

66.086

100

0.667
  comEC/celB Streptococcus pneumoniae R6

66.086

100

0.667
  comEC/celB Streptococcus mitis SK321

65.952

100

0.666
  comEC/celB Streptococcus pneumoniae TIGR4

65.55

100

0.662
  comEC Lactococcus lactis subsp. cremoris KW2

39.569

100

0.398

Multiple sequence alignment