Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AL552_RS16475 Genome accession   NZ_CP014094
Coordinates   3147606..3149129 (+) Length   507 a.a.
NCBI ID   WP_104970002.1    Uniprot ID   -
Organism   Vibrio diabolicus strain FDAARGOS_96     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3142606..3154129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL552_RS16460 (AL552_24620) ilvE 3144249..3145187 (-) 939 WP_005378953.1 branched-chain-amino-acid transaminase -
  AL552_RS16465 (AL552_24625) ilvM 3145200..3145484 (-) 285 WP_005378958.1 acetolactate synthase 2 small subunit -
  AL552_RS16470 (AL552_24630) ilvG 3145495..3147141 (-) 1647 WP_005394061.1 acetolactate synthase 2 catalytic subunit -
  AL552_RS16475 (AL552_24635) comM 3147606..3149129 (+) 1524 WP_104970002.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AL552_RS16480 (AL552_24640) - 3149187..3150143 (-) 957 WP_104970003.1 DUF2860 domain-containing protein -
  AL552_RS16485 (AL552_24645) - 3150293..3151171 (+) 879 WP_046874593.1 acyltransferase -
  AL552_RS16490 (AL552_24650) - 3151215..3151817 (-) 603 WP_005379036.1 thiol:disulfide interchange protein DsbA/DsbL -
  AL552_RS16495 (AL552_24655) - 3151852..3152838 (-) 987 WP_104970086.1 serine/threonine protein kinase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55073.19 Da        Isoelectric Point: 8.7682

>NTDB_id=168348 AL552_RS16475 WP_104970002.1 3147606..3149129(+) (comM) [Vibrio diabolicus strain FDAARGOS_96]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRPVKGVLPAALEASKIQRHLVVPHVNGDQAALVGKEQHKSAQSL
LEVCAELCGQYRLNLFQTPKRKIVEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKSRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTAIVKERVNHARTNMLNRSGKVNALLGSREIEAFCPLHKSDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGAEQ
IERAHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=168348 AL552_RS16475 WP_104970002.1 3147606..3149129(+) (comM) [Vibrio diabolicus strain FDAARGOS_96]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGCGTCGGGGTGCAAGCGCCATCGGTTAGTGTAGAAGTTCATATTAGCAA
TGGTATGCCCGGGTTTACCTTGGTAGGGCTGCCAGAGACGACGGTAAAAGAGTCCAAAGATCGCGTTCGTAGCGCGATCA
TTAATTCTAATTTTCAGTTTCCAGCTAAGCGGATCACCGTTAATTTAGCTCCAGCAGATTTGCCCAAAGAGGGAGGGCGT
TTTGATCTTCCTATCGCATTGGGGATTTTGGCCGCTTCGGAGCAAATCGCGACAGATAAGCTTAAAAACTACGAATTTGT
TGGTGAGTTAGCGCTATCTGGTGGTCTAAGACCTGTAAAAGGTGTGCTGCCTGCTGCGTTGGAAGCCAGTAAGATTCAGC
GTCATTTAGTGGTCCCACATGTGAATGGCGATCAAGCGGCGCTAGTGGGGAAAGAACAACATAAATCGGCTCAATCTCTA
CTGGAAGTATGTGCCGAGCTTTGTGGCCAATATCGGCTGAATCTTTTTCAAACGCCTAAGCGCAAAATAGTCGAAAAACA
TGGTCGAGACTTACAAGATATTATTGGCCAACAACAAGGCAAGCGCGCACTGGAGATTGCTGCCGCTGGAAACCACAACT
TACTTTTCCTTGGCCCGCCAGGTACCGGGAAAACCATGTTGGCTTCGCGTTTGTGTGACTTATTACCGGAAATGAGTGAC
GAAGAAGCAATGGAAACCGCTTCGGTGGCGTCGCTAACGCAGAGTGAAATTAATGAGCATAATTGGAAGTCGCGTCCGTT
TCGTTCGCCGCATCATTCAAGTTCAATGGCGGCATTAGTTGGCGGTGGCTCGGTACCCAGACCCGGGGAGATCTCTTTAG
CCCACAACGGCTTGTTGTTTCTCGACGAAATGCCCGAATTTGACCGAAAGGTGCTGGACTCGTTACGCGAACCGCTCGAA
TCTGGTGAGATCATTATCTCTCGGGCGCAAGGTAAAACACGCTTTCCGGCTCGTTTCCAATTAGTTGGTGCACTAAACCC
AAGTCCGACAGGGTATTACGAAGGCAATCAAGCCCGCACTAACCCACAAGCTATTTTGCGTTACCTTGGTCGATTATCTG
GACCACTGTTAGATCGCTTTGATATGTCTTTAGAAATCCCAGCTTTGCCCAAAGGGACATTAGCAGAAGGTGGTGATCGC
GGTGAGCCGACCGCTATCGTTAAAGAACGTGTGAATCATGCGCGTACCAATATGTTGAACCGCAGCGGTAAGGTCAATGC
GCTGTTAGGCAGTCGAGAAATCGAGGCGTTTTGCCCCTTACACAAAAGTGATGCGGAGTTTCTTGAAACCGCTTTGCATC
GTTTGGGGCTTTCGATTCGCGCGTATCATCGCATTATCAAAGTAGCACGAACGATAGCAGATCTTGATGGGGCGGAGCAG
ATTGAACGAGCGCACTTAGCCGAGGCGCTTGGGTATCGAGCGATGGATCGCTTACTGAAACAACTCACGGCGCAAGCGGT
ATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

94.477

100

0.945
  comM Vibrio cholerae strain A1552

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

65.878

100

0.659
  comM Glaesserella parasuis strain SC1401

64.51

100

0.649
  comM Legionella pneumophila str. Paris

49.194

97.83

0.481
  comM Legionella pneumophila strain ERS1305867

49.194

97.83

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.701

100

0.438

Multiple sequence alignment