Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | AL543_RS08755 | Genome accession | NZ_CP014043 |
| Coordinates | 413367..413957 (-) | Length | 196 a.a. |
| NCBI ID | WP_000135849.1 | Uniprot ID | - |
| Organism | Vibrio mimicus strain FDAARGOS_112 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 408367..418957
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL543_RS08735 (AL543_08000) | aroB | 409294..410379 (-) | 1086 | WP_061051686.1 | 3-dehydroquinate synthase | - |
| AL543_RS08740 (AL543_08005) | aroK | 410407..410931 (-) | 525 | WP_000818614.1 | shikimate kinase AroK | - |
| AL543_RS08745 (AL543_08010) | pilQ | 411118..412833 (-) | 1716 | WP_061053027.1 | type IV pilus secretin PilQ | Machinery gene |
| AL543_RS08750 (AL543_08015) | pilP | 412859..413377 (-) | 519 | WP_005524360.1 | pilus assembly protein PilP | Machinery gene |
| AL543_RS08755 (AL543_08020) | pilO | 413367..413957 (-) | 591 | WP_000135849.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| AL543_RS08760 (AL543_08025) | pilN | 413950..414534 (-) | 585 | WP_061051687.1 | PilN domain-containing protein | Machinery gene |
| AL543_RS08765 (AL543_08030) | pilM | 414524..415540 (-) | 1017 | WP_061051688.1 | type IV pilus assembly protein PilM | Machinery gene |
| AL543_RS08770 (AL543_08035) | - | 415682..418159 (+) | 2478 | WP_061051689.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 22935.35 Da Isoelectric Point: 4.4293
>NTDB_id=167871 AL543_RS08755 WP_000135849.1 413367..413957(-) (pilO) [Vibrio mimicus strain FDAARGOS_112]
MASFQELELDEIAEWPLLPQLLVILLLMLLIQGAGYWFYLMPKQDEIVALKQEEETVKATLRIKANKVAALPQIQAQLEE
LKERYDFLLRQLPVQKELASMLASVNQLGLDNSLTFTRIDWGERQTQEFLYRLPLNIELTGNYHDIGDFSEAIAKLPRII
NFDDVDWQRVSQESSTLHFRVKAYTYQFKQEVEDEK
MASFQELELDEIAEWPLLPQLLVILLLMLLIQGAGYWFYLMPKQDEIVALKQEEETVKATLRIKANKVAALPQIQAQLEE
LKERYDFLLRQLPVQKELASMLASVNQLGLDNSLTFTRIDWGERQTQEFLYRLPLNIELTGNYHDIGDFSEAIAKLPRII
NFDDVDWQRVSQESSTLHFRVKAYTYQFKQEVEDEK
Nucleotide
Download Length: 591 bp
>NTDB_id=167871 AL543_RS08755 WP_000135849.1 413367..413957(-) (pilO) [Vibrio mimicus strain FDAARGOS_112]
ATGGCTAGTTTTCAAGAATTAGAATTGGATGAAATTGCAGAATGGCCATTGCTGCCTCAGCTCCTTGTTATCTTGTTGTT
GATGTTGCTAATTCAAGGCGCTGGCTACTGGTTTTATCTTATGCCCAAGCAAGATGAAATTGTGGCGTTAAAACAAGAAG
AGGAAACGGTAAAAGCGACCTTAAGGATCAAAGCCAATAAAGTAGCAGCGTTACCGCAGATCCAAGCTCAGTTAGAGGAA
TTGAAAGAGCGTTATGATTTTCTATTGCGACAATTACCAGTTCAAAAAGAGCTGGCTAGCATGCTTGCCTCCGTTAACCA
ACTTGGTCTCGATAATTCGCTGACCTTTACGCGTATCGACTGGGGTGAGCGCCAAACACAAGAATTCCTCTACCGTCTAC
CGCTCAATATTGAACTGACGGGTAACTATCACGATATCGGCGATTTTTCAGAGGCGATTGCCAAACTACCGCGCATCATC
AATTTCGATGATGTGGATTGGCAGCGGGTCAGCCAAGAGAGCAGCACTCTACACTTCCGGGTAAAAGCTTACACCTACCA
GTTTAAACAGGAGGTTGAAGATGAAAAATAA
ATGGCTAGTTTTCAAGAATTAGAATTGGATGAAATTGCAGAATGGCCATTGCTGCCTCAGCTCCTTGTTATCTTGTTGTT
GATGTTGCTAATTCAAGGCGCTGGCTACTGGTTTTATCTTATGCCCAAGCAAGATGAAATTGTGGCGTTAAAACAAGAAG
AGGAAACGGTAAAAGCGACCTTAAGGATCAAAGCCAATAAAGTAGCAGCGTTACCGCAGATCCAAGCTCAGTTAGAGGAA
TTGAAAGAGCGTTATGATTTTCTATTGCGACAATTACCAGTTCAAAAAGAGCTGGCTAGCATGCTTGCCTCCGTTAACCA
ACTTGGTCTCGATAATTCGCTGACCTTTACGCGTATCGACTGGGGTGAGCGCCAAACACAAGAATTCCTCTACCGTCTAC
CGCTCAATATTGAACTGACGGGTAACTATCACGATATCGGCGATTTTTCAGAGGCGATTGCCAAACTACCGCGCATCATC
AATTTCGATGATGTGGATTGGCAGCGGGTCAGCCAAGAGAGCAGCACTCTACACTTCCGGGTAAAAGCTTACACCTACCA
GTTTAAACAGGAGGTTGAAGATGAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
92.347 |
100 |
0.923 |
| pilO | Vibrio campbellii strain DS40M4 |
70.37 |
96.429 |
0.679 |