Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | AL543_RS08760 | Genome accession | NZ_CP014043 |
| Coordinates | 413950..414534 (-) | Length | 194 a.a. |
| NCBI ID | WP_061051687.1 | Uniprot ID | - |
| Organism | Vibrio mimicus strain FDAARGOS_112 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 408950..419534
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL543_RS08735 (AL543_08000) | aroB | 409294..410379 (-) | 1086 | WP_061051686.1 | 3-dehydroquinate synthase | - |
| AL543_RS08740 (AL543_08005) | aroK | 410407..410931 (-) | 525 | WP_000818614.1 | shikimate kinase AroK | - |
| AL543_RS08745 (AL543_08010) | pilQ | 411118..412833 (-) | 1716 | WP_061053027.1 | type IV pilus secretin PilQ | Machinery gene |
| AL543_RS08750 (AL543_08015) | pilP | 412859..413377 (-) | 519 | WP_005524360.1 | pilus assembly protein PilP | Machinery gene |
| AL543_RS08755 (AL543_08020) | pilO | 413367..413957 (-) | 591 | WP_000135849.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| AL543_RS08760 (AL543_08025) | pilN | 413950..414534 (-) | 585 | WP_061051687.1 | PilN domain-containing protein | Machinery gene |
| AL543_RS08765 (AL543_08030) | pilM | 414524..415540 (-) | 1017 | WP_061051688.1 | type IV pilus assembly protein PilM | Machinery gene |
| AL543_RS08770 (AL543_08035) | - | 415682..418159 (+) | 2478 | WP_061051689.1 | penicillin-binding protein 1A | - |
| AL543_RS08775 (AL543_08040) | oxyR | 418226..419119 (-) | 894 | WP_061051690.1 | DNA-binding transcriptional regulator OxyR | - |
Sequence
Protein
Download Length: 194 a.a. Molecular weight: 22129.66 Da Isoelectric Point: 9.9059
>NTDB_id=167872 AL543_RS08760 WP_061051687.1 413950..414534(-) (pilN) [Vibrio mimicus strain FDAARGOS_112]
MLHNINLLPWRDERREAHKRRFLGLVVLGVLMAVLMQFGAGEYLSSQVAKQQERIGYLKQHIFSLDQQIAKLKMAEEEHK
ALLTRLTVVEQLQQKRNKTTDFMNQMPTLIPEGVYVDKIKMNGHDIEISGISDSTARLATMLDNLEKSTKLGEVEMHEIV
SGNKRFGKQFQTFKVSFQILTPVPDLKNGGTHNG
MLHNINLLPWRDERREAHKRRFLGLVVLGVLMAVLMQFGAGEYLSSQVAKQQERIGYLKQHIFSLDQQIAKLKMAEEEHK
ALLTRLTVVEQLQQKRNKTTDFMNQMPTLIPEGVYVDKIKMNGHDIEISGISDSTARLATMLDNLEKSTKLGEVEMHEIV
SGNKRFGKQFQTFKVSFQILTPVPDLKNGGTHNG
Nucleotide
Download Length: 585 bp
>NTDB_id=167872 AL543_RS08760 WP_061051687.1 413950..414534(-) (pilN) [Vibrio mimicus strain FDAARGOS_112]
ATGCTGCATAACATTAACTTATTACCGTGGCGAGATGAGCGTCGCGAAGCACATAAACGGCGTTTTTTAGGGCTCGTTGT
TCTTGGTGTTTTGATGGCTGTACTCATGCAATTTGGGGCTGGAGAATACTTAAGCAGTCAAGTTGCAAAGCAGCAGGAAC
GAATTGGTTATTTGAAGCAACACATCTTCTCGTTGGATCAGCAAATCGCCAAACTCAAAATGGCAGAGGAAGAGCATAAA
GCGCTGCTGACTCGTCTTACTGTCGTTGAGCAGTTGCAGCAAAAACGCAATAAGACCACAGACTTTATGAACCAAATGCC
CACCCTTATTCCAGAGGGGGTTTATGTCGACAAGATCAAAATGAATGGTCATGACATTGAGATTTCGGGGATCAGCGATT
CCACCGCGCGCTTAGCGACCATGCTCGATAACTTGGAAAAATCCACCAAGTTAGGTGAGGTGGAGATGCATGAGATTGTT
TCGGGCAATAAACGCTTTGGTAAGCAATTCCAGACCTTCAAAGTCTCATTTCAAATTCTGACGCCAGTTCCTGACCTGAA
AAATGGAGGTACGCATAATGGCTAG
ATGCTGCATAACATTAACTTATTACCGTGGCGAGATGAGCGTCGCGAAGCACATAAACGGCGTTTTTTAGGGCTCGTTGT
TCTTGGTGTTTTGATGGCTGTACTCATGCAATTTGGGGCTGGAGAATACTTAAGCAGTCAAGTTGCAAAGCAGCAGGAAC
GAATTGGTTATTTGAAGCAACACATCTTCTCGTTGGATCAGCAAATCGCCAAACTCAAAATGGCAGAGGAAGAGCATAAA
GCGCTGCTGACTCGTCTTACTGTCGTTGAGCAGTTGCAGCAAAAACGCAATAAGACCACAGACTTTATGAACCAAATGCC
CACCCTTATTCCAGAGGGGGTTTATGTCGACAAGATCAAAATGAATGGTCATGACATTGAGATTTCGGGGATCAGCGATT
CCACCGCGCGCTTAGCGACCATGCTCGATAACTTGGAAAAATCCACCAAGTTAGGTGAGGTGGAGATGCATGAGATTGTT
TCGGGCAATAAACGCTTTGGTAAGCAATTCCAGACCTTCAAAGTCTCATTTCAAATTCTGACGCCAGTTCCTGACCTGAA
AAATGGAGGTACGCATAATGGCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio cholerae strain A1552 |
86.082 |
100 |
0.861 |
| pilN | Vibrio campbellii strain DS40M4 |
57.812 |
98.969 |
0.572 |