Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   AL543_RS08750 Genome accession   NZ_CP014043
Coordinates   412859..413377 (-) Length   172 a.a.
NCBI ID   WP_005524360.1    Uniprot ID   -
Organism   Vibrio mimicus strain FDAARGOS_112     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 407859..418377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL543_RS08730 (AL543_07995) - 407876..409240 (-) 1365 Protein_367 AAA family ATPase -
  AL543_RS08735 (AL543_08000) aroB 409294..410379 (-) 1086 WP_061051686.1 3-dehydroquinate synthase -
  AL543_RS08740 (AL543_08005) aroK 410407..410931 (-) 525 WP_000818614.1 shikimate kinase AroK -
  AL543_RS08745 (AL543_08010) pilQ 411118..412833 (-) 1716 WP_061053027.1 type IV pilus secretin PilQ Machinery gene
  AL543_RS08750 (AL543_08015) pilP 412859..413377 (-) 519 WP_005524360.1 pilus assembly protein PilP Machinery gene
  AL543_RS08755 (AL543_08020) pilO 413367..413957 (-) 591 WP_000135849.1 type 4a pilus biogenesis protein PilO Machinery gene
  AL543_RS08760 (AL543_08025) pilN 413950..414534 (-) 585 WP_061051687.1 PilN domain-containing protein Machinery gene
  AL543_RS08765 (AL543_08030) pilM 414524..415540 (-) 1017 WP_061051688.1 type IV pilus assembly protein PilM Machinery gene
  AL543_RS08770 (AL543_08035) - 415682..418159 (+) 2478 WP_061051689.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18998.91 Da        Isoelectric Point: 9.8335

>NTDB_id=167870 AL543_RS08750 WP_005524360.1 412859..413377(-) (pilP) [Vibrio mimicus strain FDAARGOS_112]
MKNNPAWLSLITLFLLVGCKANQEDLAGYVAQVEREARKEVTKLKPILEFEVTAYQQHSGREPFVLPKEALVQNQPVAKS
DCWQPSPRAKNGPLERYPLSQLRLKGVMSSGGSISALVQTPAGNVVKVKAGQYVGNNNGKITRVDDNYLLINETLPDGLG
CWNQRNVKLALK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=167870 AL543_RS08750 WP_005524360.1 412859..413377(-) (pilP) [Vibrio mimicus strain FDAARGOS_112]
ATGAAAAATAACCCTGCATGGTTGTCTCTTATCACCTTGTTTCTGTTGGTGGGGTGTAAAGCTAATCAAGAAGATCTGGC
CGGGTATGTCGCACAAGTAGAACGTGAAGCACGCAAGGAAGTTACTAAACTCAAACCGATTTTGGAATTTGAAGTGACGG
CCTATCAACAGCACTCAGGACGTGAGCCATTTGTGTTGCCTAAAGAAGCTTTGGTGCAAAACCAACCTGTTGCGAAATCA
GACTGCTGGCAGCCTTCCCCACGAGCTAAAAATGGCCCATTAGAGCGTTATCCATTAAGTCAATTGCGCCTGAAAGGGGT
AATGAGCAGTGGCGGATCCATCTCGGCGTTAGTGCAAACCCCCGCGGGTAATGTCGTCAAAGTTAAAGCAGGGCAGTACG
TGGGTAACAATAACGGAAAAATTACACGAGTGGATGATAACTATTTATTAATTAACGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

87.791

100

0.878
  pilP Vibrio campbellii strain DS40M4

56.213

98.256

0.552

Multiple sequence alignment