Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AL483_RS18280 Genome accession   NZ_CP014016
Coordinates   1115428..1116318 (-) Length   296 a.a.
NCBI ID   WP_002480687.1    Uniprot ID   -
Organism   Staphylococcus simulans strain FDAARGOS_124     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1110428..1121318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL483_RS18265 (AL483_05520) xerC 1110816..1111706 (-) 891 WP_002480690.1 tyrosine recombinase XerC -
  AL483_RS18270 (AL483_05525) trmFO 1111828..1113135 (-) 1308 WP_002480689.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AL483_RS18275 (AL483_05530) topA 1113219..1115285 (-) 2067 WP_023015697.1 type I DNA topoisomerase -
  AL483_RS18280 (AL483_05535) dprA 1115428..1116318 (-) 891 WP_002480687.1 DNA-processing protein DprA Machinery gene
  AL483_RS18285 (AL483_05540) sucD 1116538..1117452 (-) 915 WP_023015699.1 succinate--CoA ligase subunit alpha -
  AL483_RS18290 (AL483_05545) sucC 1117473..1118639 (-) 1167 WP_002480685.1 ADP-forming succinate--CoA ligase subunit beta -
  AL483_RS18295 (AL483_05550) - 1118868..1119638 (-) 771 WP_002480684.1 ribonuclease HII -
  AL483_RS18300 (AL483_05555) ylqF 1119638..1120507 (-) 870 WP_061054762.1 ribosome biogenesis GTPase YlqF -
  AL483_RS18305 (AL483_05560) - 1120652..1121140 (-) 489 WP_002480682.1 GyrI-like domain-containing protein -

Sequence

Protein


Download         Length: 296 a.a.        Molecular weight: 34023.13 Da        Isoelectric Point: 8.7983

>NTDB_id=167243 AL483_RS18280 WP_002480687.1 1115428..1116318(-) (dprA) [Staphylococcus simulans strain FDAARGOS_124]
MNLKELDLELLRLRYAGYSTKQIYALLFRYPDYFELNLPERMTKLRQFSQNTASKTMLLHYQTYCQIEPNDIYQSLVAQN
IHLISIFHPDYPHLLKHIYAPPLLLFCKGNRTCLKAPHYLSVVGSREATKYTQNALEYLFKNEALHELVIVSGLAKGGDA
FAHEAALHYNMATIGVLAFGHYHHYPKETRALRKRIEQTGLTLSEYIPTDRPARYKFPERNRIISGLSQGVLITESRERS
GAQITVDLALEQDRNVYVLPGSLFQKLTIGNLKRAQEGAKIVLSAQDIMEDYETLN

Nucleotide


Download         Length: 891 bp        

>NTDB_id=167243 AL483_RS18280 WP_002480687.1 1115428..1116318(-) (dprA) [Staphylococcus simulans strain FDAARGOS_124]
TTGAACCTCAAAGAATTAGATTTAGAACTCCTCAGATTACGCTACGCAGGTTACTCCACAAAGCAAATATATGCACTTTT
ATTCAGGTATCCAGACTATTTTGAACTAAATTTACCAGAAAGAATGACAAAACTTCGACAATTTTCACAAAATACTGCCT
CTAAAACTATGCTTCTGCATTATCAAACATATTGTCAGATAGAGCCTAATGATATTTATCAATCGTTAGTTGCTCAAAAC
ATCCACTTAATTTCCATTTTTCATCCTGATTATCCTCACTTGCTTAAACACATTTATGCACCTCCATTATTATTATTTTG
TAAAGGCAATAGAACTTGCTTAAAAGCACCTCACTATTTAAGTGTCGTCGGTTCTAGAGAAGCGACAAAGTATACACAAA
ATGCATTAGAATACCTCTTTAAGAATGAAGCATTACATGAGCTCGTTATCGTTTCAGGTTTAGCTAAAGGCGGAGATGCA
TTTGCACATGAAGCGGCTTTACACTATAATATGGCAACGATTGGCGTTTTAGCATTTGGTCATTATCATCATTATCCTAA
AGAAACGCGTGCATTACGAAAACGAATAGAACAAACAGGTTTAACCCTCTCAGAATATATCCCCACAGATAGACCTGCCA
GATATAAATTTCCGGAACGTAATCGTATCATTAGCGGCTTATCGCAAGGTGTACTGATTACTGAGTCTAGAGAAAGAAGC
GGCGCACAAATCACAGTAGATTTAGCTTTAGAACAAGACAGAAATGTTTATGTGTTGCCAGGCAGCTTATTTCAAAAATT
GACCATTGGAAATTTAAAACGCGCACAAGAAGGCGCGAAAATCGTTTTGAGTGCGCAAGATATTATGGAAGATTATGAAA
CATTAAATTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(78-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

51.568

96.959

0.5
  dprA Staphylococcus aureus MW2

51.568

96.959

0.5
  dprA Legionella pneumophila strain ERS1305867

38.047

100

0.382
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

37.801

98.311

0.372
  dprA/cilB/dalA Streptococcus pneumoniae D39

37.801

98.311

0.372
  dprA/cilB/dalA Streptococcus pneumoniae R6

37.801

98.311

0.372
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

37.801

98.311

0.372
  dprA/cilB/dalA Streptococcus mitis SK321

37.113

98.311

0.365
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

37.113

98.311

0.365

Multiple sequence alignment