Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ASL16_RS05730 | Genome accession | NZ_CP013953 |
| Coordinates | 1160214..1160684 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934768.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain NCCP14558 isolate sequencing | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1144450..1192141 | 1160214..1160684 | within | 0 |
Gene organization within MGE regions
Location: 1144450..1192141
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ASL16_RS05610 (ASL16_05615) | - | 1144450..1145376 (-) | 927 | WP_000757575.1 | glycerophosphodiester phosphodiesterase | - |
| ASL16_RS05615 (ASL16_05620) | - | 1145615..1145869 (+) | 255 | WP_001049150.1 | YlbG family protein | - |
| ASL16_RS05620 (ASL16_05625) | - | 1145872..1146261 (-) | 390 | WP_000814565.1 | DUF7147 family protein | - |
| ASL16_RS05625 (ASL16_05630) | rsmD | 1146331..1146873 (+) | 543 | WP_001263796.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| ASL16_RS05630 (ASL16_05635) | coaD | 1146875..1147357 (+) | 483 | WP_000401377.1 | pantetheine-phosphate adenylyltransferase | - |
| ASL16_RS05635 (ASL16_05640) | - | 1147419..1148558 (-) | 1140 | WP_000843611.1 | nucleotidyltransferase | - |
| ASL16_RS05640 (ASL16_05645) | - | 1148685..1149242 (+) | 558 | WP_000872158.1 | YceD family protein | - |
| ASL16_RS05650 (ASL16_05655) | rpmF | 1149322..1149495 (+) | 174 | WP_000290472.1 | 50S ribosomal protein L32 | - |
| ASL16_RS05655 (ASL16_05660) | - | 1149612..1150997 (-) | 1386 | WP_000861313.1 | recombinase family protein | - |
| ASL16_RS05660 (ASL16_05665) | - | 1151204..1151884 (-) | 681 | WP_000392109.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| ASL16_RS05665 (ASL16_05670) | - | 1151920..1152639 (-) | 720 | WP_000358220.1 | XRE family transcriptional regulator | - |
| ASL16_RS05670 (ASL16_05675) | - | 1152781..1152999 (+) | 219 | WP_001198673.1 | helix-turn-helix transcriptional regulator | - |
| ASL16_RS05675 (ASL16_05680) | - | 1153014..1153322 (+) | 309 | WP_001153965.1 | hypothetical protein | - |
| ASL16_RS05680 (ASL16_05685) | - | 1153479..1154270 (+) | 792 | WP_001148569.1 | phage antirepressor | - |
| ASL16_RS05685 (ASL16_05690) | tscA | 1154271..1154495 (+) | 225 | WP_000187184.1 | type II toxin-antitoxin system antitoxin TscA | - |
| ASL16_RS05690 (ASL16_05695) | - | 1154535..1154678 (+) | 144 | WP_000939498.1 | hypothetical protein | - |
| ASL16_RS05695 (ASL16_05700) | - | 1154700..1155347 (-) | 648 | WP_001838167.1 | hypothetical protein | - |
| ASL16_RS16475 | - | 1155406..1155534 (+) | 129 | WP_001559112.1 | hypothetical protein | - |
| ASL16_RS05700 (ASL16_05705) | - | 1155527..1155694 (+) | 168 | WP_001285957.1 | DUF1270 domain-containing protein | - |
| ASL16_RS05705 (ASL16_05710) | - | 1155695..1156015 (+) | 321 | WP_000219666.1 | hypothetical protein | - |
| ASL16_RS05710 (ASL16_05715) | - | 1156109..1156369 (+) | 261 | WP_000291075.1 | DUF1108 family protein | - |
| ASL16_RS15520 | - | 1156378..1156641 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| ASL16_RS05715 (ASL16_05720) | - | 1156650..1158593 (+) | 1944 | WP_000700555.1 | AAA family ATPase | - |
| ASL16_RS05720 (ASL16_05725) | - | 1158595..1159515 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| ASL16_RS05725 (ASL16_05730) | - | 1159596..1160213 (+) | 618 | WP_071890040.1 | MBL fold metallo-hydrolase | - |
| ASL16_RS05730 (ASL16_05735) | ssbA | 1160214..1160684 (+) | 471 | WP_000934768.1 | single-stranded DNA-binding protein | Machinery gene |
| ASL16_RS05735 (ASL16_05740) | - | 1160714..1161601 (+) | 888 | WP_000148306.1 | DnaD domain protein | - |
| ASL16_RS05740 (ASL16_05745) | - | 1161608..1161826 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| ASL16_RS05745 (ASL16_05750) | - | 1161835..1162239 (+) | 405 | WP_000401973.1 | RusA family crossover junction endodeoxyribonuclease | - |
| ASL16_RS05750 (ASL16_05755) | - | 1162252..1162629 (+) | 378 | WP_031875644.1 | SA1788 family PVL leukocidin-associated protein | - |
| ASL16_RS05755 (ASL16_05760) | - | 1162630..1162878 (+) | 249 | WP_015980409.1 | phi PVL orf 51-like protein | - |
| ASL16_RS05760 (ASL16_05765) | - | 1162891..1163292 (+) | 402 | WP_015978402.1 | hypothetical protein | - |
| ASL16_RS05765 (ASL16_05770) | - | 1163289..1163573 (+) | 285 | WP_001105618.1 | hypothetical protein | - |
| ASL16_RS05770 (ASL16_05775) | - | 1163566..1163814 (+) | 249 | WP_001065026.1 | DUF1024 family protein | - |
| ASL16_RS05775 (ASL16_05780) | - | 1163807..1164343 (+) | 537 | WP_031789556.1 | dUTPase | - |
| ASL16_RS05780 (ASL16_05785) | - | 1164380..1164586 (+) | 207 | WP_000195810.1 | DUF1381 domain-containing protein | - |
| ASL16_RS05785 (ASL16_05790) | rinB | 1164583..1164756 (+) | 174 | WP_000595257.1 | transcriptional activator RinB | - |
| ASL16_RS05790 (ASL16_05795) | - | 1164757..1164903 (+) | 147 | WP_000990001.1 | hypothetical protein | - |
| ASL16_RS05795 (ASL16_05800) | - | 1164927..1165349 (+) | 423 | WP_000162696.1 | RinA family phage transcriptional activator | - |
| ASL16_RS05800 (ASL16_05805) | - | 1165536..1165976 (+) | 441 | WP_001003272.1 | terminase small subunit | - |
| ASL16_RS05805 (ASL16_05810) | - | 1165963..1167240 (+) | 1278 | WP_000169945.1 | PBSX family phage terminase large subunit | - |
| ASL16_RS05810 (ASL16_05815) | - | 1167251..1168789 (+) | 1539 | WP_001568999.1 | phage portal protein | - |
| ASL16_RS05815 (ASL16_05820) | - | 1168796..1169791 (+) | 996 | WP_031794387.1 | minor capsid protein | - |
| ASL16_RS05820 (ASL16_05825) | - | 1169864..1170034 (+) | 171 | WP_000072208.1 | hypothetical protein | - |
| ASL16_RS16320 | - | 1170062..1170149 (+) | 88 | Protein_1125 | hypothetical protein | - |
| ASL16_RS05825 (ASL16_05830) | - | 1170143..1170763 (+) | 621 | WP_063663447.1 | DUF4355 domain-containing protein | - |
| ASL16_RS05830 (ASL16_05835) | - | 1170777..1171751 (+) | 975 | WP_000438512.1 | phage major capsid protein | - |
| ASL16_RS05835 (ASL16_05840) | - | 1171773..1172060 (+) | 288 | WP_031771475.1 | hypothetical protein | - |
| ASL16_RS05840 (ASL16_05845) | - | 1172069..1172401 (+) | 333 | WP_000208960.1 | phage head-tail connector protein | - |
| ASL16_RS05845 (ASL16_05850) | - | 1172398..1172700 (+) | 303 | WP_009560319.1 | hypothetical protein | - |
| ASL16_RS05850 (ASL16_05855) | - | 1172700..1173047 (+) | 348 | WP_001017811.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| ASL16_RS05855 (ASL16_05860) | - | 1173059..1173442 (+) | 384 | WP_000188653.1 | hypothetical protein | - |
| ASL16_RS05860 (ASL16_05865) | - | 1173461..1174042 (+) | 582 | WP_000002583.1 | phage major tail protein, TP901-1 family | - |
| ASL16_RS05865 (ASL16_05870) | - | 1174104..1174469 (+) | 366 | WP_001100163.1 | tail assembly chaperone | - |
| ASL16_RS05870 (ASL16_05875) | - | 1174499..1174843 (+) | 345 | WP_000105584.1 | hypothetical protein | - |
| ASL16_RS05875 (ASL16_05880) | - | 1174860..1178324 (+) | 3465 | WP_031881830.1 | membrane protein | - |
| ASL16_RS05880 (ASL16_05885) | - | 1178337..1179284 (+) | 948 | WP_031881831.1 | phage tail family protein | - |
| ASL16_RS05885 (ASL16_05890) | - | 1179293..1181194 (+) | 1902 | WP_031783966.1 | SGNH/GDSL hydrolase family protein | - |
| ASL16_RS05890 (ASL16_05895) | - | 1181209..1183119 (+) | 1911 | WP_031898410.1 | hypothetical protein | - |
| ASL16_RS05895 (ASL16_05900) | - | 1183119..1184942 (+) | 1824 | WP_000259596.1 | phage baseplate upper protein | - |
| ASL16_RS05900 (ASL16_05905) | - | 1184942..1185319 (+) | 378 | WP_000705902.1 | DUF2977 domain-containing protein | - |
| ASL16_RS05905 (ASL16_05910) | - | 1185323..1185496 (+) | 174 | WP_001800921.1 | XkdX family protein | - |
| ASL16_RS05910 (ASL16_05915) | - | 1185537..1185836 (+) | 300 | WP_000466767.1 | DUF2951 domain-containing protein | - |
| ASL16_RS05915 (ASL16_05920) | - | 1185973..1187871 (+) | 1899 | WP_063663450.1 | glucosaminidase domain-containing protein | - |
| ASL16_RS05920 (ASL16_05925) | - | 1187884..1189056 (+) | 1173 | WP_063663453.1 | BppU family phage baseplate upper protein | - |
| ASL16_RS05925 (ASL16_05930) | - | 1189062..1189457 (+) | 396 | WP_000398882.1 | hypothetical protein | - |
| ASL16_RS05930 (ASL16_05935) | - | 1189515..1189952 (+) | 438 | WP_000354135.1 | phage holin | - |
| ASL16_RS05935 (ASL16_05940) | - | 1189933..1191378 (+) | 1446 | WP_001148142.1 | SH3 domain-containing protein | - |
| ASL16_RS05940 (ASL16_05945) | - | 1191621..1191773 (+) | 153 | WP_001788502.1 | hypothetical protein | - |
| ASL16_RS05945 (ASL16_05950) | - | 1191844..1191954 (+) | 111 | WP_000139423.1 | hypothetical protein | - |
| ASL16_RS05950 (ASL16_05955) | - | 1191956..1192141 (+) | 186 | WP_001286805.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17747.64 Da Isoelectric Point: 4.9816
>NTDB_id=166563 ASL16_RS05730 WP_000934768.1 1160214..1160684(+) (ssbA) [Staphylococcus aureus strain NCCP14558 isolate sequencing]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYKQQAQQSRGQSQYPYNKPVKDNPFANANDPIEIDDDDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYKQQAQQSRGQSQYPYNKPVKDNPFANANDPIEIDDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=166563 ASL16_RS05730 WP_000934768.1 1160214..1160684(+) (ssbA) [Staphylococcus aureus strain NCCP14558 isolate sequencing]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACAAACAACAAGCGCAACAATCACGTGGACAGTCTCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACAAACAACAAGCGCAACAATCACGTGGACAGTCTCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.765 |
100 |
0.564 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Neisseria meningitidis MC58 |
33.526 |
100 |
0.372 |
| ssb | Neisseria gonorrhoeae MS11 |
33.526 |
100 |
0.372 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |