Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AFK66_RS01480 | Genome accession | NZ_CP013940 |
| Coordinates | 316568..317104 (+) | Length | 178 a.a. |
| NCBI ID | WP_004386202.1 | Uniprot ID | A0A2S9UB01 |
| Organism | Cronobacter malonaticus LMG 23826 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 311568..322104
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AFK66_RS01465 (AFK66_002175) | - | 312553..312897 (-) | 345 | WP_007778519.1 | hypothetical protein | - |
| AFK66_RS01470 (AFK66_002180) | - | 312910..313422 (-) | 513 | WP_007778516.1 | hypothetical protein | - |
| AFK66_RS01475 (AFK66_002185) | uvrA | 313512..316337 (-) | 2826 | WP_023897907.1 | excinuclease ABC subunit UvrA | - |
| AFK66_RS01480 (AFK66_002190) | ssb | 316568..317104 (+) | 537 | WP_004386202.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| AFK66_RS01485 (AFK66_002195) | - | 317450..318496 (+) | 1047 | WP_007778508.1 | GGDEF domain-containing protein | - |
| AFK66_RS01490 (AFK66_002200) | - | 318672..319016 (+) | 345 | WP_032968434.1 | hypothetical protein | - |
| AFK66_RS01495 (AFK66_002205) | - | 319079..319357 (-) | 279 | WP_007778502.1 | YjcB family protein | - |
| AFK66_RS01500 (AFK66_020480) | - | 319945..321552 (+) | 1608 | WP_144432650.1 | EAL domain-containing protein | - |
| AFK66_RS01505 (AFK66_020485) | soxS | 321540..321863 (-) | 324 | WP_004386206.1 | superoxide response transcriptional regulator SoxS | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 19109.11 Da Isoelectric Point: 5.2358
>NTDB_id=166362 AFK66_RS01480 WP_004386202.1 316568..317104(+) (ssb) [Cronobacter malonaticus LMG 23826]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANLRLATSESWRDKQTGEMKEVTEWHSVVLYGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQSGQDRYSTEVVVNVGGTMQMLGGRQGGGAGGNMGGGQQQGGWGQPQQPQQQGGGAQFSGGAQSRPQQQ
APAPSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANLRLATSESWRDKQTGEMKEVTEWHSVVLYGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQSGQDRYSTEVVVNVGGTMQMLGGRQGGGAGGNMGGGQQQGGWGQPQQPQQQGGGAQFSGGAQSRPQQQ
APAPSNEPPMDFDDDIPF
Nucleotide
Download Length: 537 bp
>NTDB_id=166362 AFK66_RS01480 WP_004386202.1 316568..317104(+) (ssb) [Cronobacter malonaticus LMG 23826]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCGAACGG
CGGGGCCGTGGCGAACCTGCGCCTGGCGACTTCCGAATCCTGGCGCGATAAGCAGACCGGTGAGATGAAAGAAGTGACCG
AATGGCACAGCGTCGTGCTGTACGGGAAACTGGCGGAAGTCGCTGGCGAATACCTGCGCAAAGGCTCGCAGGTGTACATC
GAAGGTCAGCTGCGTACCCGTAAGTGGCAGGATCAGAGCGGTCAGGATCGCTACTCTACCGAAGTTGTTGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCAGGCGGCAACATGGGCGGCGGTCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGCAGCAGGGTGGTGGCGCGCAGTTCAGCGGCGGCGCACAGTCTCGTCCGCAGCAGCAG
GCGCCAGCGCCTTCTAACGAACCGCCGATGGATTTCGACGACGATATCCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCGAACGG
CGGGGCCGTGGCGAACCTGCGCCTGGCGACTTCCGAATCCTGGCGCGATAAGCAGACCGGTGAGATGAAAGAAGTGACCG
AATGGCACAGCGTCGTGCTGTACGGGAAACTGGCGGAAGTCGCTGGCGAATACCTGCGCAAAGGCTCGCAGGTGTACATC
GAAGGTCAGCTGCGTACCCGTAAGTGGCAGGATCAGAGCGGTCAGGATCGCTACTCTACCGAAGTTGTTGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCAGGCGGCAACATGGGCGGCGGTCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGCAGCAGGGTGGTGGCGCGCAGTTCAGCGGCGGCGCACAGTCTCGTCCGCAGCAGCAG
GCGCCAGCGCCTTCTAACGAACCGCCGATGGATTTCGACGACGATATCCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.725 |
100 |
0.764 |
| ssb | Glaesserella parasuis strain SC1401 |
58.378 |
100 |
0.607 |
| ssb | Neisseria meningitidis MC58 |
47.802 |
100 |
0.489 |
| ssb | Neisseria gonorrhoeae MS11 |
47.802 |
100 |
0.489 |