Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Regulator
Locus tag   BEN15_RS06575 Genome accession   NZ_CP016877
Coordinates   1230446..1231807 (-) Length   453 a.a.
NCBI ID   WP_065973041.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain KLDS 3.1003     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1225446..1236807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN15_RS06560 (BEN15_06555) - 1227710..1228051 (+) 342 WP_024404826.1 LytR/AlgR family response regulator transcription factor -
  BEN15_RS06565 (BEN15_06560) comE/blpR 1228053..1228793 (+) 741 WP_065973040.1 response regulator transcription factor Regulator
  BEN15_RS06570 (BEN15_06565) - 1228804..1230144 (+) 1341 WP_039671036.1 sensor histidine kinase -
  BEN15_RS11035 - 1230192..1230347 (-) 156 WP_096811960.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  BEN15_RS06575 (BEN15_06570) comB 1230446..1231807 (-) 1362 WP_065973041.1 bacteriocin secretion accessory protein Regulator
  BEN15_RS06580 (BEN15_06575) comA/nlmT 1231819..1233972 (-) 2154 WP_065973042.1 peptide cleavage/export ABC transporter Regulator
  BEN15_RS06585 (BEN15_06580) - 1234269..1234523 (+) 255 WP_039671033.1 Blp family class II bacteriocin -
  BEN15_RS06590 (BEN15_06585) - 1234538..1234741 (+) 204 WP_039671032.1 Blp family class II bacteriocin -
  BEN15_RS10455 - 1235255..1235533 (-) 279 Protein_1219 transposase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50313.53 Da        Isoelectric Point: 5.3052

>NTDB_id=165066 BEN15_RS06575 WP_065973041.1 1230446..1231807(-) (comB) [Streptococcus thermophilus strain KLDS 3.1003]
MNPNLFKSAEFYQRRYHNFATLLIVPLILLVGFLLTFSLFAKKEVTVTSRGEITPTTIIASIQSTSNNPITTNNLANNKL
VKKNELIIQYAETMESSQKQALETQLATLNRQKTGLETLKESLSQGTNLFTGEDEFGYINTFNNFITQSQDIELGISKTN
AEVSNQAALAGNTIAAIDTQINQIYHQIAEYEELRQAITNRQTSLSADNPHQATLNNFLAQSQQDSQTGLTDQYLSQINQ
SISGLESSIASLNIQRAGTGSVATYDNSFVTKVEVLRIQFLQSASQQLTTLETQITELVAQLEQASVRLENNTITAPETG
VIHLNSEFEGKSLIPSGSEIAQIYPNINQTKEFLITYYVTSEHVALLKEKQDVRLSLEKVGNQSITVVGKIKSIDKTATK
TEEGNLFKVTALAQLSDKHSDVIQYGLQGRVTSIIAKKTYFDYYKDKILSNHD

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=165066 BEN15_RS06575 WP_065973041.1 1230446..1231807(-) (comB) [Streptococcus thermophilus strain KLDS 3.1003]
ATGAACCCTAATTTATTCAAAAGTGCTGAATTTTATCAACGGCGCTATCATAATTTTGCGACACTCTTAATTGTCCCCTT
GATATTATTAGTCGGCTTTCTTCTAACCTTCTCCCTTTTTGCCAAAAAGGAGGTTACCGTCACATCAAGAGGTGAAATTA
CTCCGACGACAATCATCGCTTCCATCCAATCCACCAGCAATAACCCTATCACAACCAATAATCTAGCCAATAACAAGCTG
GTTAAAAAGAATGAGCTCATCATCCAATACGCTGAAACTATGGAGAGTTCCCAAAAACAAGCCCTTGAAACCCAGCTAGC
CACTCTGAATAGACAGAAAACTGGACTTGAAACCCTCAAAGAAAGCCTGTCACAGGGAACAAACCTCTTTACAGGGGAGG
ACGAATTTGGTTATATCAATACTTTTAACAACTTTATCACCCAGTCACAGGACATCGAACTAGGAATTTCCAAAACCAAT
GCAGAGGTGAGTAACCAGGCCGCCCTAGCAGGTAATACCATTGCTGCGATTGACACGCAAATCAATCAAATCTATCACCA
AATAGCAGAATACGAGGAGCTTCGCCAAGCCATTACCAATAGACAGACCAGTTTATCAGCTGACAATCCACACCAAGCCA
CCTTAAACAATTTCTTAGCCCAATCCCAACAAGACTCCCAGACAGGATTAACTGATCAATACCTTTCTCAAATCAACCAA
AGTATCTCAGGGCTAGAATCATCCATAGCTAGTCTGAACATCCAACGAGCTGGAACTGGCTCTGTTGCAACCTATGATAA
CAGCTTTGTAACAAAGGTTGAGGTCCTAAGAATACAGTTTTTACAATCGGCCTCTCAGCAGCTGACCACCCTTGAAACGC
AAATCACAGAGCTAGTGGCACAGCTAGAGCAAGCATCCGTCCGACTAGAAAACAATACCATTACAGCTCCTGAAACAGGG
GTAATCCATCTCAATAGTGAGTTTGAAGGAAAGTCTTTGATTCCAAGCGGTAGTGAAATCGCTCAGATTTACCCCAATAT
CAATCAAACCAAAGAATTCCTCATTACTTACTACGTGACTTCAGAACATGTCGCCTTACTCAAAGAAAAACAAGACGTAC
GCCTGAGCTTAGAAAAAGTTGGCAACCAAAGCATCACTGTTGTTGGAAAAATTAAGTCTATCGATAAAACTGCTACTAAA
ACTGAGGAGGGGAATCTTTTCAAAGTTACTGCCTTGGCTCAACTATCCGACAAGCATAGCGACGTCATCCAGTACGGTCT
CCAGGGTCGAGTCACAAGTATCATTGCCAAGAAGACTTACTTTGATTACTACAAGGATAAAATTTTATCCAACCATGATT
AA

Domains

Predicted by InterProScan.

HlyD family secretion protein ()

(313-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Streptococcus pneumoniae Rx1

38.444

99.338

0.382
  comB Streptococcus pneumoniae D39

38.444

99.338

0.382
  comB Streptococcus pneumoniae R6

38.444

99.338

0.382
  comB Streptococcus pneumoniae TIGR4

38.222

99.338

0.38
  comB Streptococcus mitis SK321

37.639

99.117

0.373
  comB Streptococcus mitis NCTC 12261

37.639

99.117

0.373