Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | AUO94_RS08850 | Genome accession | NZ_CP013661 |
| Coordinates | 1778120..1778593 (+) | Length | 157 a.a. |
| NCBI ID | WP_008497641.1 | Uniprot ID | A0AAI9WAF2 |
| Organism | Planococcus kocurii strain ATCC 43650 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1765389..1820613 | 1778120..1778593 | within | 0 |
Gene organization within MGE regions
Location: 1765389..1820613
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AUO94_RS08785 (AUO94_00275) | mnmE | 1766035..1767420 (+) | 1386 | WP_058383856.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE | - |
| AUO94_RS08790 (AUO94_00280) | mnmG | 1767443..1769332 (+) | 1890 | WP_058383857.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG | - |
| AUO94_RS08795 (AUO94_00285) | rsmG | 1769426..1770139 (+) | 714 | WP_058383858.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| AUO94_RS08800 (AUO94_00290) | noc | 1770219..1771085 (+) | 867 | WP_058383859.1 | nucleoid occlusion protein | - |
| AUO94_RS08805 (AUO94_00295) | - | 1771305..1772066 (+) | 762 | WP_058383860.1 | ParA family protein | - |
| AUO94_RS08810 (AUO94_00300) | - | 1772059..1772892 (+) | 834 | WP_058383861.1 | ParB/RepB/Spo0J family partition protein | - |
| AUO94_RS08815 (AUO94_00305) | - | 1773021..1773734 (+) | 714 | WP_058383862.1 | DUF554 domain-containing protein | - |
| AUO94_RS08820 (AUO94_00310) | - | 1773753..1774643 (+) | 891 | WP_082707515.1 | mechanosensitive ion channel family protein | - |
| AUO94_RS08825 (AUO94_00315) | - | 1774659..1774859 (+) | 201 | WP_058383863.1 | DUF951 domain-containing protein | - |
| AUO94_RS08830 (AUO94_00320) | ychF | 1774948..1776048 (+) | 1101 | WP_058386809.1 | redox-regulated ATPase YchF | - |
| AUO94_RS08835 (AUO94_00325) | - | 1776647..1777027 (+) | 381 | WP_058383864.1 | gamma-glutamylcyclotransferase family protein | - |
| AUO94_RS08840 (AUO94_00330) | - | 1777045..1777602 (-) | 558 | WP_058383865.1 | DUF3267 domain-containing protein | - |
| AUO94_RS08845 (AUO94_00335) | rpsF | 1777782..1778069 (+) | 288 | WP_058383866.1 | 30S ribosomal protein S6 | - |
| AUO94_RS08850 (AUO94_00340) | ssbA | 1778120..1778593 (+) | 474 | WP_008497641.1 | single-stranded DNA-binding protein | Machinery gene |
| AUO94_RS08855 (AUO94_00345) | rpsR | 1778643..1778879 (+) | 237 | WP_006830564.1 | 30S ribosomal protein S18 | - |
| AUO94_RS08860 (AUO94_00350) | - | 1779083..1780042 (+) | 960 | WP_058383867.1 | YybS family protein | - |
| AUO94_RS08865 (AUO94_00355) | - | 1780057..1782033 (+) | 1977 | WP_058383868.1 | DHH family phosphoesterase | - |
| AUO94_RS08870 (AUO94_00360) | rplI | 1782030..1782479 (+) | 450 | WP_058383869.1 | 50S ribosomal protein L9 | - |
| AUO94_RS08875 (AUO94_00365) | dnaB | 1782492..1783847 (+) | 1356 | WP_049693565.1 | replicative DNA helicase | - |
| AUO94_RS08880 (AUO94_00370) | - | 1783979..1785265 (+) | 1287 | WP_058383870.1 | adenylosuccinate synthase | - |
| AUO94_RS08885 (AUO94_00375) | yycF | 1785552..1786259 (+) | 708 | WP_058383871.1 | response regulator YycF | - |
| AUO94_RS08890 (AUO94_00380) | walK | 1786264..1788090 (+) | 1827 | WP_062429931.1 | cell wall metabolism sensor histidine kinase WalK | - |
| AUO94_RS08895 (AUO94_00385) | - | 1788081..1789424 (+) | 1344 | WP_237150096.1 | YycH family regulatory protein | - |
| AUO94_RS08900 (AUO94_00390) | - | 1789411..1790217 (+) | 807 | WP_058383874.1 | two-component system regulatory protein YycI | - |
| AUO94_RS08905 (AUO94_00395) | - | 1790231..1791019 (+) | 789 | WP_058383875.1 | MBL fold metallo-hydrolase | - |
| AUO94_RS08910 (AUO94_00400) | - | 1791366..1792568 (+) | 1203 | WP_049693586.1 | S1C family serine protease | - |
| AUO94_RS08915 (AUO94_00405) | - | 1792751..1793500 (-) | 750 | WP_058383876.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| AUO94_RS17030 | - | 1793888..1794052 (+) | 165 | WP_071152944.1 | CxxH/CxxC protein | - |
| AUO94_RS17615 | rlmH | 1794142..1794621 (+) | 480 | WP_082707516.1 | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | - |
| AUO94_RS17620 | - | 1795234..1796265 (-) | 1032 | Protein_1704 | recombinase family protein | - |
| AUO94_RS08925 (AUO94_00415) | - | 1796273..1796941 (-) | 669 | WP_058383877.1 | helix-turn-helix transcriptional regulator | - |
| AUO94_RS08930 (AUO94_00420) | - | 1797469..1798368 (+) | 900 | WP_058383878.1 | replication initiation factor domain-containing protein | - |
| AUO94_RS08935 (AUO94_00425) | - | 1798372..1798938 (+) | 567 | WP_058383879.1 | hypothetical protein | - |
| AUO94_RS08940 (AUO94_00430) | - | 1799090..1799341 (-) | 252 | WP_058383880.1 | DUF3006 domain-containing protein | - |
| AUO94_RS17040 | - | 1799328..1801028 (-) | 1701 | WP_156423939.1 | S-layer homology domain-containing protein | - |
| AUO94_RS08950 (AUO94_00440) | - | 1801232..1801519 (+) | 288 | WP_058383881.1 | hypothetical protein | - |
| AUO94_RS08955 (AUO94_00445) | - | 1801784..1802362 (+) | 579 | WP_058383882.1 | recombinase family protein | - |
| AUO94_RS08960 (AUO94_00450) | - | 1802467..1803036 (+) | 570 | WP_058383883.1 | hypothetical protein | - |
| AUO94_RS08965 (AUO94_00455) | radC | 1803115..1803717 (-) | 603 | WP_058383884.1 | RadC family protein | - |
| AUO94_RS08970 (AUO94_00460) | - | 1803893..1804639 (-) | 747 | WP_058383885.1 | hypothetical protein | - |
| AUO94_RS08975 (AUO94_00465) | - | 1805332..1806813 (+) | 1482 | WP_058383886.1 | type I restriction-modification system subunit M | - |
| AUO94_RS08980 (AUO94_00470) | - | 1806803..1807945 (+) | 1143 | WP_058383887.1 | restriction endonuclease subunit S | - |
| AUO94_RS17800 (AUO94_00475) | - | 1807936..1808160 (+) | 225 | WP_058383888.1 | restriction endonuclease subunit S | - |
| AUO94_RS08990 (AUO94_00480) | - | 1808157..1811087 (+) | 2931 | WP_058383889.1 | type I restriction endonuclease subunit R | - |
| AUO94_RS08995 (AUO94_00485) | - | 1811109..1811837 (-) | 729 | WP_058383890.1 | M48 family metallopeptidase | - |
| AUO94_RS09000 (AUO94_00490) | - | 1812155..1813267 (+) | 1113 | WP_058383891.1 | YecA family protein | - |
| AUO94_RS09005 (AUO94_00495) | - | 1813407..1814354 (-) | 948 | WP_058383892.1 | PIN domain-containing protein | - |
| AUO94_RS09010 (AUO94_00500) | - | 1814475..1814789 (-) | 315 | WP_058383893.1 | hypothetical protein | - |
| AUO94_RS09015 (AUO94_00505) | - | 1815059..1816510 (+) | 1452 | WP_058383894.1 | ATP-binding protein | - |
| AUO94_RS17700 | - | 1817610..1817738 (+) | 129 | WP_257721241.1 | hypothetical protein | - |
| AUO94_RS09020 (AUO94_00510) | - | 1817967..1819271 (+) | 1305 | WP_058383895.1 | GTPase | - |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 17301.93 Da Isoelectric Point: 4.9561
>NTDB_id=163649 AUO94_RS08850 WP_008497641.1 1778120..1778593(+) (ssbA) [Planococcus kocurii strain ATCC 43650]
MINRVVLVGRLTKDPDLRYTPSGAAVARFTLAVNRTFSNAQGERETDFINCTVWRKQAENTANFLKKGSLAGVEGRIQTG
SYEGQDGKRVYTTEVVADSVQFLEPKSANTDRSQGQQPSYQQNQSPSPSQQNHTRVDEDPFSSGSGPIEVSDDDLPF
MINRVVLVGRLTKDPDLRYTPSGAAVARFTLAVNRTFSNAQGERETDFINCTVWRKQAENTANFLKKGSLAGVEGRIQTG
SYEGQDGKRVYTTEVVADSVQFLEPKSANTDRSQGQQPSYQQNQSPSPSQQNHTRVDEDPFSSGSGPIEVSDDDLPF
Nucleotide
Download Length: 474 bp
>NTDB_id=163649 AUO94_RS08850 WP_008497641.1 1778120..1778593(+) (ssbA) [Planococcus kocurii strain ATCC 43650]
ATGATTAACCGAGTTGTTTTAGTCGGAAGACTGACAAAAGATCCAGACCTTCGTTACACACCAAGCGGCGCGGCAGTTGC
TCGTTTTACACTTGCTGTAAATCGGACTTTCTCCAACGCTCAAGGTGAACGCGAAACTGATTTCATTAATTGTACTGTTT
GGCGCAAACAAGCTGAAAATACAGCGAACTTCCTGAAAAAAGGAAGCTTGGCTGGTGTTGAAGGCCGCATCCAGACTGGT
AGCTACGAGGGACAAGACGGGAAACGCGTCTATACAACAGAAGTAGTAGCGGACAGTGTTCAATTCCTTGAACCGAAAAG
CGCTAATACGGATCGTTCACAAGGGCAGCAGCCTTCCTATCAACAGAACCAATCACCGAGCCCAAGTCAGCAAAACCATA
CTCGTGTAGATGAAGATCCATTCTCAAGCGGTAGCGGTCCGATCGAAGTATCAGATGACGATTTACCGTTCTAA
ATGATTAACCGAGTTGTTTTAGTCGGAAGACTGACAAAAGATCCAGACCTTCGTTACACACCAAGCGGCGCGGCAGTTGC
TCGTTTTACACTTGCTGTAAATCGGACTTTCTCCAACGCTCAAGGTGAACGCGAAACTGATTTCATTAATTGTACTGTTT
GGCGCAAACAAGCTGAAAATACAGCGAACTTCCTGAAAAAAGGAAGCTTGGCTGGTGTTGAAGGCCGCATCCAGACTGGT
AGCTACGAGGGACAAGACGGGAAACGCGTCTATACAACAGAAGTAGTAGCGGACAGTGTTCAATTCCTTGAACCGAAAAG
CGCTAATACGGATCGTTCACAAGGGCAGCAGCCTTCCTATCAACAGAACCAATCACCGAGCCCAAGTCAGCAAAACCATA
CTCGTGTAGATGAAGATCCATTCTCAAGCGGTAGCGGTCCGATCGAAGTATCAGATGACGATTTACCGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.884 |
100 |
0.656 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
53.529 |
100 |
0.58 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
67.925 |
67.516 |
0.459 |
| ssb | Neisseria gonorrhoeae MS11 |
36.207 |
100 |
0.401 |
| ssb | Neisseria meningitidis MC58 |
35.465 |
100 |
0.389 |
| ssb | Vibrio cholerae strain A1552 |
33.333 |
100 |
0.382 |