Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | AUC31_RS15720 | Genome accession | NZ_CP013659 |
| Coordinates | 3172196..3172690 (-) | Length | 164 a.a. |
| NCBI ID | WP_058382281.1 | Uniprot ID | A0A1C7DWC7 |
| Organism | Planococcus rifietoensis strain M8 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3167196..3177690
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AUC31_RS15705 (AUC31_10410) | - | 3168753..3169706 (-) | 954 | WP_058383741.1 | YybS family protein | - |
| AUC31_RS15710 (AUC31_10405) | - | 3171542..3171796 (-) | 255 | WP_058382283.1 | hypothetical protein | - |
| AUC31_RS15715 (AUC31_10400) | rpsR | 3171906..3172142 (-) | 237 | WP_058382282.1 | 30S ribosomal protein S18 | - |
| AUC31_RS15720 (AUC31_10395) | ssbA | 3172196..3172690 (-) | 495 | WP_058382281.1 | single-stranded DNA-binding protein | Machinery gene |
| AUC31_RS15725 (AUC31_10390) | rpsF | 3172742..3173029 (-) | 288 | WP_058382280.1 | 30S ribosomal protein S6 | - |
| AUC31_RS15730 (AUC31_10385) | - | 3173195..3173746 (+) | 552 | WP_058382279.1 | DUF3267 domain-containing protein | - |
| AUC31_RS15735 (AUC31_10380) | - | 3174214..3174597 (-) | 384 | WP_058382278.1 | gamma-glutamylcyclotransferase family protein | - |
| AUC31_RS15740 (AUC31_10375) | ychF | 3174726..3175826 (-) | 1101 | WP_058383740.1 | redox-regulated ATPase YchF | - |
| AUC31_RS15745 (AUC31_10370) | - | 3175907..3176107 (-) | 201 | WP_058382277.1 | DUF951 domain-containing protein | - |
| AUC31_RS15750 (AUC31_10365) | - | 3176123..3176983 (-) | 861 | WP_058383739.1 | mechanosensitive ion channel family protein | - |
Sequence
Protein
Download Length: 164 a.a. Molecular weight: 17960.55 Da Isoelectric Point: 4.9719
>NTDB_id=163625 AUC31_RS15720 WP_058382281.1 3172196..3172690(-) (ssbA) [Planococcus rifietoensis strain M8]
MINRVVLVGRLTKDPDLRYTPSGAAVARFTLAVNRTFSNAQGEREADFINCTVWRKQAENTANFLKKGSLAGVEGRIQTG
SYEGQDGKRVYTTEVVADSVQFLEPKSANSGSGDRSNDRSYGQQPSYQQNQPSSPSQQNNTRVDDDPFSSGSGKIEVSDD
DLPF
MINRVVLVGRLTKDPDLRYTPSGAAVARFTLAVNRTFSNAQGEREADFINCTVWRKQAENTANFLKKGSLAGVEGRIQTG
SYEGQDGKRVYTTEVVADSVQFLEPKSANSGSGDRSNDRSYGQQPSYQQNQPSSPSQQNNTRVDDDPFSSGSGKIEVSDD
DLPF
Nucleotide
Download Length: 495 bp
>NTDB_id=163625 AUC31_RS15720 WP_058382281.1 3172196..3172690(-) (ssbA) [Planococcus rifietoensis strain M8]
ATGATCAACCGGGTTGTATTGGTCGGAAGACTGACAAAAGATCCTGATCTTCGTTACACGCCAAGCGGAGCGGCGGTGGC
TCGTTTTACACTTGCTGTAAACCGGACATTCTCCAATGCGCAAGGTGAACGCGAAGCAGATTTTATCAATTGTACCGTTT
GGCGCAAGCAGGCTGAAAACACAGCGAATTTCCTCAAAAAAGGAAGTCTCGCCGGTGTCGAAGGCCGCATTCAGACTGGC
AGCTACGAGGGTCAAGATGGCAAGCGCGTTTATACGACGGAAGTGGTGGCGGACAGCGTTCAATTCCTTGAACCGAAAAG
CGCCAACTCCGGATCTGGGGATCGTTCAAACGATCGCTCGTATGGACAGCAGCCGTCTTATCAACAGAACCAACCGTCTA
GTCCAAGTCAGCAAAACAATACTCGTGTAGATGACGATCCGTTTTCAAGCGGAAGCGGGAAGATCGAAGTTTCGGACGAC
GATCTGCCGTTCTAA
ATGATCAACCGGGTTGTATTGGTCGGAAGACTGACAAAAGATCCTGATCTTCGTTACACGCCAAGCGGAGCGGCGGTGGC
TCGTTTTACACTTGCTGTAAACCGGACATTCTCCAATGCGCAAGGTGAACGCGAAGCAGATTTTATCAATTGTACCGTTT
GGCGCAAGCAGGCTGAAAACACAGCGAATTTCCTCAAAAAAGGAAGTCTCGCCGGTGTCGAAGGCCGCATTCAGACTGGC
AGCTACGAGGGTCAAGATGGCAAGCGCGTTTATACGACGGAAGTGGTGGCGGACAGCGTTCAATTCCTTGAACCGAAAAG
CGCCAACTCCGGATCTGGGGATCGTTCAAACGATCGCTCGTATGGACAGCAGCCGTCTTATCAACAGAACCAACCGTCTA
GTCCAAGTCAGCAAAACAATACTCGTGTAGATGACGATCCGTTTTCAAGCGGAAGCGGGAAGATCGAAGTTTCGGACGAC
GATCTGCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
60.465 |
100 |
0.634 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
56.647 |
100 |
0.598 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
68.868 |
64.634 |
0.445 |
| ssb | Neisseria gonorrhoeae MS11 |
35.196 |
100 |
0.384 |
| ssb | Vibrio cholerae strain A1552 |
33.702 |
100 |
0.372 |
| ssb | Neisseria meningitidis MC58 |
34.483 |
100 |
0.366 |