Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/celB   Type   Machinery gene
Locus tag   ATM98_RS00950 Genome accession   NZ_CP013651
Coordinates   165140..167380 (+) Length   746 a.a.
NCBI ID   WP_061563755.1    Uniprot ID   -
Organism   Streptococcus sp. A12     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 160140..172380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATM98_RS00930 (ATM98_00930) - 160311..161057 (-) 747 WP_061563751.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  ATM98_RS00935 (ATM98_00935) - 161156..163495 (-) 2340 WP_061563752.1 cation-translocating P-type ATPase -
  ATM98_RS00940 (ATM98_00940) - 163633..164376 (+) 744 WP_061563753.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  ATM98_RS00945 (ATM98_00945) comEA/celA/cilE 164479..165156 (+) 678 WP_061563754.1 helix-hairpin-helix domain-containing protein Machinery gene
  ATM98_RS00950 (ATM98_00950) comEC/celB 165140..167380 (+) 2241 WP_061563755.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ATM98_RS00955 (ATM98_00955) - 167443..168108 (+) 666 WP_061563756.1 DUF805 domain-containing protein -
  ATM98_RS00960 (ATM98_00960) holA 168086..169123 (+) 1038 WP_061563757.1 DNA polymerase III subunit delta -
  ATM98_RS00965 (ATM98_00965) sodA 169195..169800 (+) 606 WP_048689195.1 superoxide dismutase SodA -
  ATM98_RS00970 (ATM98_00970) - 170054..171526 (+) 1473 WP_061563758.1 helicase HerA-like domain-containing protein -

Sequence

Protein


Download         Length: 746 a.a.        Molecular weight: 86041.71 Da        Isoelectric Point: 8.9761

>NTDB_id=163390 ATM98_RS00950 WP_061563755.1 165140..167380(+) (comEC/celB) [Streptococcus sp. A12]
MLQWIRSLNIHPFHLTLPVLALYYWMYTGHWLASIFLLAFFILFRRRYDGKRFLRLLGFLSLFALCFAFRIEQGKQESSD
HRVPRVIQLLPDTIKVNGDALSCRAKSGSRTFQVFYQLQSEEEQAYFKHLDHGLELRIKGELEPPTKQRNFMGFDYQAYL
KTQGIYHLLKISHILEKRPAEPRDFIGLLSSWRRKALVWVHQHFPQPMSHYMTGLLFGFLDVEFEEMSQLYSNLGIIHLF
ALSGMQVAFFLDAFRRFFLRLGLEQEKVAYLLYPFSLLYAGMTGFSVSVVRSLLQKLLAQAGIKGMENMGVTLLLLVLLL
PASLLTAGGLLSCAYAFILTLTSTEEEKEGIQKVIKESLVLTLGVLPFLIFFFGEYQPWSLPLTFIFSLLFDLLLLPGLS
VVFLLSFLYPLTFWNPFFVWMEKSMEYIASFTSQSLVFGQPSIYYFILLLCLLACLYEMRKVKKWRYLFLLLICSVFAIV
KHPLENEITIIDIGQGDSILLRDWRGKTILIDTGGKVDFGKKEEWKKRRSTSNAEWTLIPYLKSRGIDQIDHMILTHTDT
DHMGDLEVLAAKVSIKEINISKGSLKKDSFVRLLKRLNLPVKTLEAGDQLSIFDGSAEVLYPVEIGDGSNNDSIVLYGRF
YGLSFLFTGDLEEEGEKILLARYPQLRVDVLKAGHHGSKGSSHPAFLEKIQAKIALISAGEKNRYQHPHQETLERFEELQ
MSVFRTDQQGAIRFRGWNQWKIETVR

Nucleotide


Download         Length: 2241 bp        

>NTDB_id=163390 ATM98_RS00950 WP_061563755.1 165140..167380(+) (comEC/celB) [Streptococcus sp. A12]
ATGTTACAGTGGATTAGAAGTCTCAACATTCATCCATTTCATCTCACCTTGCCGGTTTTAGCTCTCTATTATTGGATGTA
CACGGGACACTGGCTCGCTTCGATCTTCCTTCTGGCCTTCTTCATCTTGTTTAGGAGACGCTACGATGGCAAACGATTTC
TGCGCCTCCTAGGGTTTCTTTCCCTCTTTGCCCTTTGTTTTGCTTTCCGGATTGAACAGGGAAAACAAGAGTCAAGCGAT
CATAGGGTTCCAAGGGTCATTCAGCTTTTACCGGATACCATCAAGGTGAATGGAGATGCTTTATCCTGTCGTGCCAAGTC
AGGTAGCCGTACTTTTCAGGTTTTCTACCAGCTTCAGTCAGAGGAAGAACAAGCCTATTTTAAACACCTGGATCATGGGC
TAGAATTACGGATCAAAGGGGAATTAGAACCCCCGACAAAACAGCGTAATTTTATGGGCTTTGATTATCAGGCTTATCTG
AAAACACAAGGGATTTATCACCTTTTGAAAATCAGTCACATTCTTGAAAAGAGACCTGCTGAGCCTAGAGATTTCATAGG
TCTGCTGTCTAGTTGGAGGCGAAAGGCGCTTGTATGGGTTCACCAGCATTTTCCCCAGCCCATGAGCCACTATATGACGG
GCTTGCTTTTTGGTTTTTTAGATGTAGAGTTTGAAGAAATGAGCCAGCTGTATTCGAACTTGGGGATTATCCATTTGTTT
GCCTTGTCGGGCATGCAGGTTGCCTTCTTCCTAGATGCCTTTCGACGCTTCTTTCTCCGCTTGGGACTGGAGCAGGAAAA
GGTTGCCTACCTCCTCTATCCGTTTTCGCTTCTTTATGCTGGGATGACAGGCTTTTCGGTTTCGGTCGTTCGAAGCCTCT
TACAGAAACTCCTGGCCCAGGCTGGGATCAAAGGAATGGAGAATATGGGGGTCACTCTCCTCTTGTTAGTCCTTCTCTTA
CCTGCCTCTTTATTGACTGCTGGAGGTCTCTTATCCTGCGCCTACGCTTTTATATTGACGCTAACCTCTACCGAGGAGGA
GAAGGAGGGGATCCAAAAAGTCATCAAGGAGAGTTTAGTGCTAACGCTAGGAGTTCTTCCTTTTTTGATATTTTTCTTTG
GAGAATACCAACCCTGGTCCCTTCCTCTAACCTTTATTTTTTCTCTCTTATTTGACCTTCTGTTGTTGCCAGGACTGAGT
GTCGTCTTTCTCCTCTCTTTTCTGTATCCCTTGACCTTCTGGAATCCTTTCTTTGTCTGGATGGAAAAAAGTATGGAGTA
TATAGCGAGCTTCACTAGTCAATCCTTGGTTTTTGGACAGCCAAGTATTTACTATTTTATATTACTATTGTGCTTGCTAG
CTTGCCTCTATGAGATGCGAAAGGTTAAGAAATGGAGATACCTGTTCCTACTCTTAATATGCTCTGTATTTGCTATCGTG
AAGCATCCTTTAGAAAATGAGATTACCATTATTGATATTGGTCAAGGTGATAGTATTTTGCTACGTGATTGGCGTGGGAA
AACCATTTTAATTGATACAGGAGGAAAAGTAGACTTTGGCAAAAAGGAGGAATGGAAGAAGCGAAGGTCTACTAGCAATG
CAGAATGGACCCTGATCCCCTATCTCAAGAGCAGGGGGATTGACCAGATTGATCATATGATTCTCACGCATACTGACACA
GATCACATGGGAGATTTGGAAGTGCTTGCGGCTAAGGTTAGTATTAAGGAAATCAACATTTCCAAGGGGAGCTTAAAAAA
AGACTCTTTTGTCCGTTTGCTCAAACGGTTGAACTTACCGGTAAAAACGTTGGAGGCTGGTGATCAATTGTCGATCTTTG
ATGGGAGTGCAGAAGTCCTCTATCCGGTAGAAATAGGAGATGGGAGTAATAACGATTCCATTGTTCTTTATGGCCGCTTT
TATGGGTTGTCCTTCCTTTTTACAGGAGATTTAGAAGAAGAAGGGGAAAAGATCTTGTTAGCCCGTTATCCTCAACTGCG
CGTAGATGTCCTCAAAGCAGGTCACCATGGTTCTAAGGGATCTTCTCACCCTGCCTTCTTAGAGAAAATCCAAGCAAAAA
TTGCCCTGATATCTGCAGGTGAAAAAAATCGTTATCAGCACCCTCATCAGGAAACCTTGGAGCGTTTCGAAGAGTTACAA
ATGAGTGTTTTTCGTACAGATCAGCAAGGAGCGATTCGTTTTAGAGGGTGGAATCAGTGGAAGATTGAAACCGTTCGATA
G

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(494-700)

Competence protein (Competence)

(215-458)

Domain of unknown function (DUF4131) (DUF4131)

(32-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/celB Streptococcus mitis NCTC 12261

53.59

100

0.54
  comEC/celB Streptococcus mitis SK321

53.191

100

0.536
  comEC/celB Streptococcus pneumoniae TIGR4

52.855

100

0.534
  comEC/celB Streptococcus pneumoniae Rx1

52.59

100

0.531
  comEC/celB Streptococcus pneumoniae D39

52.59

100

0.531
  comEC/celB Streptococcus pneumoniae R6

52.59

100

0.531
  comEC Lactococcus lactis subsp. cremoris KW2

44.939

99.33

0.446

Multiple sequence alignment