Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AT395_RS03925 Genome accession   NZ_CP013481
Coordinates   855943..857007 (+) Length   354 a.a.
NCBI ID   WP_042113011.1    Uniprot ID   A0A0B5F0E6
Organism   Pandoraea apista strain DSM 16535     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 850943..862007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT395_RS03910 (AT395_19565) - 851509..853167 (-) 1659 WP_042113013.1 MFS transporter -
  AT395_RS03915 (AT395_19570) - 853339..855000 (-) 1662 WP_156219660.1 sensor histidine kinase -
  AT395_RS03920 (AT395_19575) - 855051..855740 (-) 690 WP_039393077.1 response regulator transcription factor -
  AT395_RS03925 (AT395_19580) recA 855943..857007 (+) 1065 WP_042113011.1 recombinase RecA Machinery gene
  AT395_RS03930 (AT395_19585) recX 857102..857647 (+) 546 WP_048628006.1 recombination regulator RecX -
  AT395_RS03935 (AT395_19590) - 857957..858643 (+) 687 WP_042113010.1 DUF2889 domain-containing protein -
  AT395_RS03940 (AT395_19595) sucC 858640..859806 (+) 1167 WP_042113009.1 ADP-forming succinate--CoA ligase subunit beta -
  AT395_RS03945 (AT395_19600) sucD 859891..860772 (+) 882 WP_042113006.1 succinate--CoA ligase subunit alpha -
  AT395_RS03950 (AT395_19605) - 860929..861657 (+) 729 WP_042113004.1 TerC family protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37753.06 Da        Isoelectric Point: 4.8284

>NTDB_id=162952 AT395_RS03925 WP_042113011.1 855943..857007(+) (recA) [Pandoraea apista strain DSM 16535]
MEESKKGSANLSAEKGKALAAALAQIEKQFGKGSIMRLGDGEVEADIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESS
GKTTLTLQVVAEMQKIGGTCAFIDAEHALDVGYASKLGVSVPDLLISQPDTGEQALEIADALVRSGSIDLIIIDSVAALV
PKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNSTVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGS
IKKGDEVVGNETRVKVVKNKVSPPFREAIFDILYGQGISREGEIIDLGVNAKIVEKAGAWYSYNGEKIGQGKDNAREFLR
ENPEIAHEIENKVRASLGVTAINETGEIEEQDEA

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=162952 AT395_RS03925 WP_042113011.1 855943..857007(+) (recA) [Pandoraea apista strain DSM 16535]
ATGGAAGAAAGCAAGAAAGGGTCTGCCAATCTGTCGGCCGAGAAAGGCAAGGCGCTTGCCGCCGCCCTCGCGCAGATCGA
AAAGCAATTCGGCAAGGGCTCGATCATGCGTCTGGGCGACGGCGAGGTCGAAGCGGACATCCAGGTCGTCTCGACCGGCT
CGCTGGGCCTGGACATCGCGCTTGGCGTGGGTGGCCTGCCGCGCGGCCGCGTGATCGAAATCTACGGACCGGAATCGTCG
GGTAAGACCACGCTGACGCTGCAAGTCGTGGCTGAAATGCAGAAAATCGGCGGCACCTGCGCGTTCATCGACGCAGAGCA
CGCCCTCGACGTCGGATACGCAAGCAAGTTGGGCGTCTCGGTGCCGGATCTGCTGATCTCGCAGCCGGACACGGGCGAGC
AGGCGTTGGAAATCGCCGATGCGCTGGTGCGCTCGGGCTCGATCGACCTCATCATCATCGACTCGGTCGCGGCGCTGGTG
CCGAAGGCCGAAATCGAAGGTGAGATGGGCGATTCGTTGCCGGGTCTGCAAGCACGTCTGATGTCTCAGGCTCTGCGTAA
GCTGACTGGCACCATCAAGCGTACGAACAGCACGGTGATCTTCATCAACCAGATTCGTATGAAGATCGGTGTGATGTTCG
GCAATCCGGAAACCACGACGGGCGGCAATGCGCTGAAGTTCTACTCGTCGGTGCGTCTGGACATTCGCCGTATCGGTTCG
ATCAAGAAGGGTGACGAGGTCGTCGGTAACGAAACCCGCGTCAAGGTCGTCAAGAACAAGGTCTCGCCGCCGTTCCGCGA
AGCCATCTTCGATATCTTGTACGGTCAGGGGATCTCGCGCGAAGGCGAAATCATCGATCTGGGCGTGAACGCCAAGATCG
TCGAAAAAGCCGGCGCCTGGTACAGCTACAACGGTGAAAAGATCGGTCAGGGCAAGGACAACGCGCGTGAGTTCCTGCGT
GAAAATCCGGAGATTGCCCACGAGATCGAAAACAAGGTGCGTGCATCGCTCGGCGTGACGGCGATCAACGAGACCGGCGA
GATCGAAGAACAAGACGAGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B5F0E6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

85.552

99.718

0.853
  recA Neisseria gonorrhoeae MS11

72.515

96.61

0.701
  recA Neisseria gonorrhoeae MS11

72.515

96.61

0.701
  recA Neisseria gonorrhoeae strain FA1090

72.515

96.61

0.701
  recA Pseudomonas stutzeri DSM 10701

73.574

94.068

0.692
  recA Acinetobacter baumannii D1279779

70.554

96.893

0.684
  recA Acinetobacter baylyi ADP1

71.091

95.763

0.681
  recA Glaesserella parasuis strain SC1401

68.895

97.175

0.669
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.865

92.373

0.664
  recA Vibrio cholerae strain A1552

71.865

92.373

0.664
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.081

97.175

0.613
  recA Helicobacter pylori 26695

64.134

92.938

0.596
  recA Bacillus subtilis subsp. subtilis str. 168

64.526

92.373

0.596
  recA Helicobacter pylori strain NCTC11637

63.83

92.938

0.593
  recA Streptococcus pneumoniae Rx1

60.172

98.588

0.593
  recA Streptococcus pneumoniae D39

60.172

98.588

0.593
  recA Streptococcus pneumoniae R6

60.172

98.588

0.593
  recA Streptococcus pneumoniae TIGR4

60.172

98.588

0.593
  recA Streptococcus mitis NCTC 12261

59.829

99.153

0.593
  recA Latilactobacillus sakei subsp. sakei 23K

61.471

96.045

0.59
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.526

92.938

0.59
  recA Streptococcus mitis SK321

59.884

97.175

0.582
  recA Streptococcus mutans UA159

59.884

97.175

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.706

96.045

0.573
  recA Lactococcus lactis subsp. cremoris KW2

59.819

93.503

0.559
  recA Streptococcus pyogenes NZ131

60.182

92.938

0.559

Multiple sequence alignment