Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | BBH51_RS08985 | Genome accession | NZ_CP016553 |
| Coordinates | 1849700..1850713 (-) | Length | 337 a.a. |
| NCBI ID | WP_005545577.1 | Uniprot ID | A0A142G245 |
| Organism | Aggregatibacter actinomycetemcomitans strain IDH781 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1844700..1855713
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BBH51_RS08960 (BBH51_08960) | ybgC | 1845245..1845649 (-) | 405 | WP_005542293.1 | tol-pal system-associated acyl-CoA thioesterase | - |
| BBH51_RS08965 (BBH51_08965) | ybgE | 1845765..1846052 (-) | 288 | WP_005542294.1 | cyd operon protein YbgE | - |
| BBH51_RS11565 | - | 1846057..1846155 (-) | 99 | WP_019518193.1 | cytochrome bd oxidase small subunit, CydX/CbdX family | - |
| BBH51_RS08970 (BBH51_08970) | cydB | 1846167..1847303 (-) | 1137 | WP_005542295.1 | cytochrome d ubiquinol oxidase subunit II | - |
| BBH51_RS08975 (BBH51_08975) | - | 1847318..1848883 (-) | 1566 | WP_005549162.1 | cytochrome ubiquinol oxidase subunit I | - |
| BBH51_RS08980 (BBH51_08980) | - | 1849335..1849646 (+) | 312 | WP_005542297.1 | DUF5339 domain-containing protein | - |
| BBH51_RS08985 (BBH51_08985) | ruvB | 1849700..1850713 (-) | 1014 | WP_005545577.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| BBH51_RS08990 (BBH51_08990) | ruvA | 1850728..1851342 (-) | 615 | WP_005542299.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| BBH51_RS08995 (BBH51_08995) | ruvC | 1851406..1851978 (-) | 573 | WP_005554583.1 | crossover junction endodeoxyribonuclease RuvC | - |
| BBH51_RS09000 (BBH51_09000) | - | 1852034..1852444 (-) | 411 | WP_005542301.1 | hypothetical protein | - |
| BBH51_RS09005 (BBH51_09005) | - | 1852456..1853196 (-) | 741 | WP_005554582.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| BBH51_RS09010 (BBH51_09010) | nudB | 1853230..1853676 (-) | 447 | WP_005542305.1 | dihydroneopterin triphosphate diphosphatase | - |
| BBH51_RS09015 (BBH51_09015) | - | 1853782..1855050 (-) | 1269 | WP_005554581.1 | NRAMP family divalent metal transporter | - |
| BBH51_RS09020 (BBH51_09020) | - | 1855324..1855698 (+) | 375 | WP_061866548.1 | transposase | - |
Sequence
Protein
Download Length: 337 a.a. Molecular weight: 37378.90 Da Isoelectric Point: 4.7954
>NTDB_id=160705 BBH51_RS08985 WP_005545577.1 1849700..1850713(-) (ruvB) [Aggregatibacter actinomycetemcomitans strain IDH781]
MIEADRIISATAKLDEDVIDRAIRPKLLADYVGQPQVCEQMEIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYSVSDLTSIVSRSAVCLQLKINDTAAYEIARRSRGTPRIANRLLRRVRDYADVRNNG
MISEEIAKAALSMLDIDDAGFDYLDRKLLTAVLERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTSRGRIA
TLTTYRHFGIEKITRED
MIEADRIISATAKLDEDVIDRAIRPKLLADYVGQPQVCEQMEIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYSVSDLTSIVSRSAVCLQLKINDTAAYEIARRSRGTPRIANRLLRRVRDYADVRNNG
MISEEIAKAALSMLDIDDAGFDYLDRKLLTAVLERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTSRGRIA
TLTTYRHFGIEKITRED
Nucleotide
Download Length: 1014 bp
>NTDB_id=160705 BBH51_RS08985 WP_005545577.1 1849700..1850713(-) (ruvB) [Aggregatibacter actinomycetemcomitans strain IDH781]
ATGATTGAAGCAGACAGAATTATCAGTGCGACGGCAAAATTAGACGAGGATGTTATCGATCGTGCCATTCGCCCGAAATT
GCTGGCGGATTATGTGGGGCAACCGCAGGTATGCGAGCAAATGGAGATTTTCATCAAGGCGGCAAAATTGCGTCAGGATG
CGTTGGATCATTTGCTGATTTTTGGCCCGCCAGGCTTAGGAAAAACCACCTTGGCAAATATTGTTGCCAATGAAATGGGC
GTAAATATTCGCACTACGTCAGGACCCGTGCTGGAAAAAGCGGGGGATTTGGCGGCAATGTTGACCAATCTTGAACCCCA
TGATGTATTGTTTATTGATGAAATTCATCGTCTTTCTCCGGCGATTGAAGAAGTGCTTTATCCGGCAATGGAAGATTATC
AGCTTGATATTATGATTGGCGAAGGGCCGGCAGCGCGTTCCATTAAATTGGATTTGCCGCCTTTTACGCTTATCGGTGCA
ACCACCCGTGCGGGCTCTTTAACCTCTCCGTTGCGCGATCGTTTTGGTATTGTGCAGCGTTTGGAATTTTATTCCGTGTC
GGATTTAACTTCTATTGTGTCCAGAAGTGCGGTCTGTTTACAGCTTAAAATTAACGATACGGCAGCTTATGAAATCGCCC
GCCGTTCTCGCGGCACGCCACGGATTGCGAATCGGTTATTACGTCGGGTGCGTGATTATGCTGATGTGCGTAACAATGGC
ATGATTAGTGAAGAGATTGCTAAAGCAGCGCTATCCATGCTGGATATTGATGATGCGGGGTTTGACTACTTAGACAGAAA
ATTGCTTACGGCAGTTTTGGAGCGCTTTGATGGTGGTCCGGTCGGTTTGGATAATTTGGCGGCGGCAATTGGGGAAGAGC
GGGATACCATTGAAGACGTATTGGAACCATATTTAATTCAACAGGGTTTTTTACAGCGAACCTCAAGGGGGCGAATTGCT
ACACTCACCACATATCGCCATTTCGGTATTGAGAAAATTACTCGCGAAGATTAA
ATGATTGAAGCAGACAGAATTATCAGTGCGACGGCAAAATTAGACGAGGATGTTATCGATCGTGCCATTCGCCCGAAATT
GCTGGCGGATTATGTGGGGCAACCGCAGGTATGCGAGCAAATGGAGATTTTCATCAAGGCGGCAAAATTGCGTCAGGATG
CGTTGGATCATTTGCTGATTTTTGGCCCGCCAGGCTTAGGAAAAACCACCTTGGCAAATATTGTTGCCAATGAAATGGGC
GTAAATATTCGCACTACGTCAGGACCCGTGCTGGAAAAAGCGGGGGATTTGGCGGCAATGTTGACCAATCTTGAACCCCA
TGATGTATTGTTTATTGATGAAATTCATCGTCTTTCTCCGGCGATTGAAGAAGTGCTTTATCCGGCAATGGAAGATTATC
AGCTTGATATTATGATTGGCGAAGGGCCGGCAGCGCGTTCCATTAAATTGGATTTGCCGCCTTTTACGCTTATCGGTGCA
ACCACCCGTGCGGGCTCTTTAACCTCTCCGTTGCGCGATCGTTTTGGTATTGTGCAGCGTTTGGAATTTTATTCCGTGTC
GGATTTAACTTCTATTGTGTCCAGAAGTGCGGTCTGTTTACAGCTTAAAATTAACGATACGGCAGCTTATGAAATCGCCC
GCCGTTCTCGCGGCACGCCACGGATTGCGAATCGGTTATTACGTCGGGTGCGTGATTATGCTGATGTGCGTAACAATGGC
ATGATTAGTGAAGAGATTGCTAAAGCAGCGCTATCCATGCTGGATATTGATGATGCGGGGTTTGACTACTTAGACAGAAA
ATTGCTTACGGCAGTTTTGGAGCGCTTTGATGGTGGTCCGGTCGGTTTGGATAATTTGGCGGCGGCAATTGGGGAAGAGC
GGGATACCATTGAAGACGTATTGGAACCATATTTAATTCAACAGGGTTTTTTACAGCGAACCTCAAGGGGGCGAATTGCT
ACACTCACCACATATCGCCATTTCGGTATTGAGAAAATTACTCGCGAAGATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
61.774 |
97.033 |
0.599 |
| ruvB | Streptococcus pneumoniae TIGR4 |
58.282 |
96.736 |
0.564 |
| ruvB | Streptococcus pneumoniae R6 |
58.282 |
96.736 |
0.564 |
| ruvB | Streptococcus pneumoniae D39 |
58.282 |
96.736 |
0.564 |
| ruvB | Helicobacter pylori 26695 |
55.987 |
91.691 |
0.513 |
| ruvB | Synechocystis sp. PCC 6803 |
55.016 |
91.691 |
0.504 |