Detailed information NTG0160588

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: AOY37_RS01100
• Genome accession: NZ_CP013202
• Coordinates: 189720..190133 (+)
• Length: 137 a.a.
• NCBI ID: WP_000244261.1
• Uniprot ID: -
• Organism: Streptococcus agalactiae strain GBS ST-1
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 184720..195133

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOY37_RS01080 (AOY37_01080)	-	186973..187338 (+)	366	WP_000285373.1	DUF1033 family protein	-
AOY37_RS01085 (AOY37_01085)	comYA	187511..188482 (+)	972	WP_000250805.1	competence type IV pilus ATPase ComGA	Machinery gene
AOY37_RS01090 (AOY37_01090)	comYB	188376..189419 (+)	1044	WP_223295889.1	competence type IV pilus assembly protein ComGB	Machinery gene
AOY37_RS01095 (AOY37_01095)	comGC/cglC	189416..189745 (+)	330	WP_000793380.1	competence type IV pilus major pilin ComGC	Machinery gene
AOY37_RS01100 (AOY37_01100)	comYD	189720..190133 (+)	414	WP_000244261.1	competence type IV pilus minor pilin ComGD	Machinery gene
AOY37_RS01105 (AOY37_01105)	comGE	190105..190404 (+)	300	WP_000234804.1	competence type IV pilus minor pilin ComGE	-
AOY37_RS01110 (AOY37_01110)	comGF	190358..190819 (+)	462	WP_001878820.1	competence type IV pilus minor pilin ComGF	-
AOY37_RS01115 (AOY37_01115)	comGG	190797..191168 (+)	372	WP_000601104.1	competence type IV pilus minor pilin ComGG	-
AOY37_RS01120 (AOY37_01120)	comYH	191283..192257 (+)	975	WP_001008574.1	class I SAM-dependent methyltransferase	Machinery gene
AOY37_RS01125 (AOY37_01125)	-	192289..193482 (+)	1194	WP_000047534.1	acetate kinase	-
AOY37_RS01130 (AOY37_01130)	-	193634..193840 (+)	207	WP_000798241.1	helix-turn-helix transcriptional regulator	-
AOY37_RS11735	-	193899..194036 (+)	138	WP_001865900.1	hypothetical protein	-
AOY37_RS01135 (AOY37_01135)	-	194077..194532 (+)	456	WP_000905673.1	hypothetical protein	-

Sequence

Protein

• Length: 137 a.a.
• Molecular weight: 15968.43 Da
• Isoelectric Point: 9.9787

>NTDB_id=160588 AOY37_RS01100 WP_000244261.1 189720..190133(+) (comYD) [Streptococcus agalactiae strain GBS ST-1]
MVLRKFQVKAFTVLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSAFGQKKQTLTISHNYLENT
YERLYLPKTVKVVKSDTLAFDTNGGNSSLAKIQFECYRKTVTYQLYIGSGNYRKKEN

Nucleotide

• Length: 414 bp

>NTDB_id=160588 AOY37_RS01100 WP_000244261.1 189720..190133(+) (comYD) [Streptococcus agalactiae strain GBS ST-1]
ATGGTTCTCAGAAAATTTCAAGTTAAAGCATTTACTGTTTTGGAGAGCCTTATTGTATTATCAGTAGTGGCATTTATGAC
GTTAGTATTTTCAACATCATTTAATAATATTTTTAGGCAGGTTGAAGAAACAATTTTCTTCATATCCTTTGAACATCTTT
ATAGAGATACTCAGAAATTGAGTGCATTTGGTCAGAAGAAACAAACCCTTACAATCTCTCATAATTATCTCGAAAATACT
TATGAGAGACTTTATTTACCTAAAACTGTAAAAGTAGTCAAAAGTGATACACTTGCATTTGACACTAATGGAGGGAATTC
AAGCTTGGCAAAAATTCAATTTGAATGTTATAGAAAAACTGTCACGTATCAATTATATATAGGAAGTGGTAATTATCGTA
AGAAAGAAAATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	51.515	96.35	0.496
comYD	Streptococcus mutans UA159	51.515	96.35	0.496
comYD	Streptococcus gordonii str. Challis substr. CH1	47.407	98.54	0.467
comGD/cglD	Streptococcus mitis NCTC 12261	41.045	97.81	0.401
comGD/cglD	Streptococcus pneumoniae TIGR4	43.307	92.701	0.401
comGD/cglD	Streptococcus mitis SK321	43.307	92.701	0.401
comGD/cglD	Streptococcus pneumoniae Rx1	42.52	92.701	0.394
comGD/cglD	Streptococcus pneumoniae D39	42.52	92.701	0.394
comGD/cglD	Streptococcus pneumoniae R6	42.52	92.701	0.394