Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SA40TW_RS09490 Genome accession   NZ_CP013182
Coordinates   1875482..1875952 (-) Length   156 a.a.
NCBI ID   WP_000934760.1    Uniprot ID   A0AAN2D761
Organism   Staphylococcus aureus strain SA40TW     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1870482..1880952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA40TW_RS09425 (SA40TW_08995) - 1870683..1871099 (-) 417 WP_000590122.1 hypothetical protein -
  SA40TW_RS09430 (SA40TW_09000) - 1871127..1871327 (-) 201 WP_000265043.1 DUF1514 family protein -
  SA40TW_RS09435 (SA40TW_09005) rinB 1871327..1871476 (-) 150 WP_000595264.1 transcriptional activator RinB -
  SA40TW_RS09440 (SA40TW_09010) - 1871473..1871859 (-) 387 WP_000592207.1 hypothetical protein -
  SA40TW_RS09445 (SA40TW_09015) - 1871856..1872062 (-) 207 WP_000195803.1 DUF1381 domain-containing protein -
  SA40TW_RS09450 (SA40TW_09020) - 1872059..1872304 (-) 246 WP_001282074.1 hypothetical protein -
  SA40TW_RS09455 (SA40TW_09025) - 1872341..1872877 (-) 537 WP_001066448.1 dUTP diphosphatase -
  SA40TW_RS14800 - 1872870..1873040 (-) 171 WP_000714403.1 hypothetical protein -
  SA40TW_RS09460 (SA40TW_09030) - 1873027..1873281 (-) 255 WP_001065097.1 DUF1024 family protein -
  SA40TW_RS09465 (SA40TW_09035) - 1873296..1873538 (-) 243 WP_000131370.1 SAV1978 family virulence-associated passenger protein -
  SA40TW_RS09470 (SA40TW_09040) - 1873542..1873910 (-) 369 WP_000101288.1 SA1788 family PVL leukocidin-associated protein -
  SA40TW_RS09475 (SA40TW_09045) - 1873923..1874325 (-) 403 Protein_1757 RusA family crossover junction endodeoxyribonuclease -
  SA40TW_RS09480 (SA40TW_09050) - 1874334..1874552 (-) 219 WP_000338530.1 hypothetical protein -
  SA40TW_RS09485 (SA40TW_09055) - 1874559..1875452 (-) 894 WP_000148321.1 DnaD domain protein -
  SA40TW_RS09490 (SA40TW_09060) ssbA 1875482..1875952 (-) 471 WP_000934760.1 single-stranded DNA-binding protein Machinery gene
  SA40TW_RS09495 (SA40TW_09065) - 1875953..1876570 (-) 618 WP_071665632.1 MBL fold metallo-hydrolase -
  SA40TW_RS09500 (SA40TW_09070) - 1876651..1877571 (-) 921 WP_000138475.1 recombinase RecT -
  SA40TW_RS09505 (SA40TW_09075) - 1877573..1879516 (-) 1944 WP_000700555.1 AAA family ATPase -
  SA40TW_RS09510 - 1879525..1879788 (-) 264 WP_071665633.1 hypothetical protein -
  SA40TW_RS09515 (SA40TW_09080) - 1879797..1880057 (-) 261 WP_000291510.1 DUF1108 family protein -
  SA40TW_RS09520 (SA40TW_09085) - 1880062..1880364 (-) 303 WP_071665634.1 DUF2482 family protein -
  SA40TW_RS09525 (SA40TW_09090) - 1880457..1880618 (-) 162 WP_000066025.1 DUF1270 domain-containing protein -
  SA40TW_RS09530 (SA40TW_09095) - 1880615..1880935 (-) 321 WP_001120935.1 DUF771 domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17641.52 Da        Isoelectric Point: 5.2672

>NTDB_id=160411 SA40TW_RS09490 WP_000934760.1 1875482..1875952(-) (ssbA) [Staphylococcus aureus strain SA40TW]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=160411 SA40TW_RS09490 WP_000934760.1 1875482..1875952(-) (ssbA) [Staphylococcus aureus strain SA40TW]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.932

100

0.635
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.551
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Glaesserella parasuis strain SC1401

32.768

100

0.372
  ssb Neisseria meningitidis MC58

32.948

100

0.365
  ssb Neisseria gonorrhoeae MS11

32.948

100

0.365

Multiple sequence alignment