Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   A4W81_RS09305 Genome accession   NZ_CP016465
Coordinates   1813873..1815141 (-) Length   422 a.a.
NCBI ID   WP_056946885.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.3     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1808873..1820141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W81_RS09285 (A4W81_09135) add 1809871..1810889 (+) 1019 Protein_1777 adenosine deaminase -
  A4W81_RS09290 - 1810964..1812336 (+) 1373 WP_089535044.1 IS3 family transposase -
  A4W81_RS09295 (A4W81_09155) - 1812524..1812802 (-) 279 WP_146740490.1 hypothetical protein -
  A4W81_RS09300 (A4W81_09160) rlmH 1812859..1813338 (-) 480 WP_011373797.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  A4W81_RS09305 (A4W81_09165) htrA 1813873..1815141 (-) 1269 WP_056946885.1 trypsin-like peptidase domain-containing protein Regulator
  A4W81_RS09310 (A4W81_09170) vicX 1815275..1816081 (-) 807 WP_011373794.1 MBL fold metallo-hydrolase Regulator
  A4W81_RS09315 (A4W81_09175) - 1816116..1816937 (-) 822 WP_056946883.1 two-component system regulatory protein YycI -
  A4W81_RS09320 (A4W81_09180) yycH 1816942..1817442 (-) 501 WP_337962231.1 two-component system activity regulator YycH -
  A4W81_RS09325 (A4W81_09185) yycH 1817517..1818272 (-) 756 WP_337962232.1 two-component system activity regulator YycH -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 43112.23 Da        Isoelectric Point: 9.2635

>NTDB_id=160385 A4W81_RS09305 WP_056946885.1 1813873..1815141(-) (htrA) [Latilactobacillus sakei strain TMW 1.3]
MNQNSGLMKTAIVVVISALIGGGAAYAGFSRLGNSANDVTTATQTPTKAGATKISNIKVNSSSQTTTAFQKVNTSVVSVV
NLQKQQQSTGDLSSLFGSGSTDSNSSSSKSSSSDLEESSEGSGLIYEKKDGKAYIVTNNHVVAGSDKIEVILSDGTKLEA
SLVGTDAVSDLAVLKINGTKVKKTATFGDSDSIKAGESVLAIGSPLGSEYATSVTQGIISAKKRTIDVTDETTGQTTGQA
TVIQTDTAINPGNSGGPLVNMAGQVIGINSMKLASNGETSVEGMGFAIPSNEVVKIINQLVANGKVVRPALGISVIDLTN
ISSTQQSSVLKLPSSVNSGVVVASVTSNSVAKKAGISKYDVIVGLGGKTVSSVADLHTILYSYAMNSTTEIQYYHNGSLK
KANVKLTQAASSDSTTTTKQTN

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=160385 A4W81_RS09305 WP_056946885.1 1813873..1815141(-) (htrA) [Latilactobacillus sakei strain TMW 1.3]
ATGAATCAAAATTCAGGATTAATGAAAACAGCGATTGTTGTGGTTATTTCAGCGTTGATTGGTGGTGGCGCAGCCTATGC
CGGTTTTTCTCGACTCGGCAATTCGGCCAATGACGTCACGACTGCAACGCAGACGCCTACTAAAGCGGGGGCAACTAAGA
TTAGTAACATCAAAGTGAACTCATCATCACAAACGACAACCGCCTTCCAAAAGGTTAATACATCAGTTGTATCCGTTGTG
AACTTACAAAAACAACAACAATCAACCGGTGACCTGAGTTCATTATTTGGTTCAGGGAGCACTGACAGCAATAGCAGTTC
TTCTAAGAGCAGTAGCAGTGATTTAGAAGAATCCAGTGAAGGTTCAGGTTTAATCTACGAGAAAAAAGACGGCAAAGCTT
ACATCGTGACGAATAATCACGTGGTTGCTGGTTCTGATAAAATCGAAGTCATTTTGAGTGATGGCACAAAATTGGAAGCT
AGTTTAGTTGGGACAGATGCTGTTTCTGATTTGGCTGTCTTAAAAATTAACGGGACTAAAGTGAAGAAGACGGCAACGTT
TGGTGATTCAGATAGTATCAAAGCTGGTGAATCAGTTCTTGCGATCGGCTCACCATTGGGCTCAGAATACGCAACTTCTG
TCACACAAGGGATTATTTCTGCTAAGAAACGGACCATTGATGTGACAGACGAAACAACCGGCCAAACAACTGGTCAAGCA
ACTGTTATTCAAACTGATACAGCGATTAACCCTGGGAATTCAGGTGGCCCATTAGTCAACATGGCTGGTCAAGTCATTGG
GATTAATTCAATGAAATTAGCTTCAAATGGTGAAACGTCTGTTGAAGGGATGGGCTTTGCTATTCCAAGTAACGAAGTCG
TTAAAATTATTAACCAATTGGTGGCTAACGGGAAAGTGGTTAGACCAGCACTTGGGATTAGTGTGATTGATTTAACCAAT
ATTTCATCAACACAACAATCTTCAGTACTAAAATTACCATCATCCGTTAACAGCGGGGTAGTAGTGGCCTCAGTAACAAG
CAATTCAGTTGCTAAGAAGGCTGGTATCAGTAAGTATGATGTGATTGTCGGCTTAGGCGGCAAGACGGTTTCAAGTGTGG
CAGACTTACACACAATTCTATATAGTTACGCAATGAACAGCACAACTGAAATTCAGTACTATCATAATGGCAGCTTGAAA
AAAGCGAATGTTAAACTCACACAAGCAGCTTCATCAGATAGTACGACAACAACTAAACAAACGAACTAA

Domains

Predicted by InterProScan.

Trypsin-like peptidase domain (Trypsin_2)

(121-268)

Peptidase family M50 (Peptidase_M50)

(256-413)

PDZ domain (PDZ_2)

(309-406)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mitis NCTC 12261

45.074

96.209

0.434
  htrA Streptococcus gordonii str. Challis substr. CH1

43.237

98.104

0.424
  htrA Streptococcus mutans UA159

46.237

88.152

0.408
  htrA Streptococcus pneumoniae TIGR4

49.284

82.701

0.408
  htrA Streptococcus pneumoniae R6

49.284

82.701

0.408
  htrA Streptococcus pneumoniae Rx1

49.284

82.701

0.408
  htrA Streptococcus pneumoniae D39

49.284

82.701

0.408