Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   A4W81_RS09310 Genome accession   NZ_CP016465
Coordinates   1815275..1816081 (-) Length   268 a.a.
NCBI ID   WP_011373794.1    Uniprot ID   Q38ZJ7
Organism   Latilactobacillus sakei strain TMW 1.3     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1810275..1821081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W81_RS09290 - 1810964..1812336 (+) 1373 WP_089535044.1 IS3 family transposase -
  A4W81_RS09295 (A4W81_09155) - 1812524..1812802 (-) 279 WP_146740490.1 hypothetical protein -
  A4W81_RS09300 (A4W81_09160) rlmH 1812859..1813338 (-) 480 WP_011373797.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  A4W81_RS09305 (A4W81_09165) htrA 1813873..1815141 (-) 1269 WP_056946885.1 trypsin-like peptidase domain-containing protein Regulator
  A4W81_RS09310 (A4W81_09170) vicX 1815275..1816081 (-) 807 WP_011373794.1 MBL fold metallo-hydrolase Regulator
  A4W81_RS09315 (A4W81_09175) - 1816116..1816937 (-) 822 WP_056946883.1 two-component system regulatory protein YycI -
  A4W81_RS09320 (A4W81_09180) yycH 1816942..1817442 (-) 501 WP_337962231.1 two-component system activity regulator YycH -
  A4W81_RS09325 (A4W81_09185) yycH 1817517..1818272 (-) 756 WP_337962232.1 two-component system activity regulator YycH -
  A4W81_RS09330 (A4W81_09190) walK 1818262..1820160 (-) 1899 WP_250784780.1 cell wall metabolism sensor histidine kinase WalK -
  A4W81_RS09335 (A4W81_09195) yycF 1820170..1820883 (-) 714 WP_011373790.1 response regulator YycF -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 29709.33 Da        Isoelectric Point: 5.0105

>NTDB_id=160386 A4W81_RS09310 WP_011373794.1 1815275..1816081(-) (vicX) [Latilactobacillus sakei strain TMW 1.3]
MVEKDEMRVSVLASSSSGNTTFIETPTQKILVDAGMSGKRVQDLMHSIGRDLKEVDSLLVTHEHRDHSSGVGVLARRYGI
DVYANQPTWDAMASIIGTVPDEHKHVFEMGKTKTLGDIDVESYGVSHDAAAAQFYQFHHNNRAFAILTDTGYVSDQIRGT
IENADAYLVECNHDLEMLRMGKYPWSLKQRILSDTGHLSNEDGASALMAFMGQQTKRVFLGHLSQENNMKELAHLTVASI
LEQHDYGVGTDFEILDTDPAIADPLFVV

Nucleotide


Download         Length: 807 bp        

>NTDB_id=160386 A4W81_RS09310 WP_011373794.1 1815275..1816081(-) (vicX) [Latilactobacillus sakei strain TMW 1.3]
ATGGTAGAAAAAGATGAAATGCGGGTTAGCGTCTTAGCCAGCAGTAGTTCAGGCAACACAACTTTTATTGAAACACCAAC
CCAAAAAATATTAGTCGATGCGGGGATGAGTGGCAAACGGGTTCAGGATTTAATGCATAGCATTGGTCGGGATTTAAAAG
AGGTTGATAGTCTACTAGTGACGCACGAACATCGCGATCACAGTAGCGGTGTTGGCGTCTTAGCCCGCCGTTACGGGATT
GATGTGTACGCCAATCAACCGACTTGGGATGCGATGGCGTCAATTATTGGCACCGTCCCTGATGAACATAAGCACGTCTT
TGAGATGGGCAAAACCAAAACACTCGGCGATATCGATGTTGAAAGTTATGGTGTGTCACACGATGCCGCTGCGGCGCAAT
TCTATCAATTTCATCATAACAACCGGGCCTTCGCAATCTTAACGGATACGGGGTACGTTTCGGATCAAATCAGAGGCACT
ATCGAAAATGCGGATGCCTACTTGGTGGAATGTAATCACGATTTGGAAATGTTACGGATGGGAAAATATCCGTGGTCGCT
TAAACAACGGATCCTTAGTGATACTGGACATCTGTCTAACGAAGATGGCGCTTCAGCCTTAATGGCTTTTATGGGGCAAC
AAACAAAACGCGTTTTCCTAGGCCATTTGAGCCAAGAAAACAATATGAAGGAGTTGGCACACTTAACGGTGGCGTCAATT
TTAGAACAACATGATTATGGTGTTGGCACGGACTTTGAAATTTTAGATACAGATCCAGCGATTGCGGACCCTTTATTTGT
TGTTTAG

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(17-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38ZJ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

59.073

96.642

0.571