Detailed information
Bioinformatically predicted
Overview
| Name | ysxA/radC | Type | Machinery gene |
| Locus tag | A4W81_RS04460 | Genome accession | NZ_CP016465 |
| Coordinates | 869931..870275 (+) | Length | 114 a.a. |
| NCBI ID | WP_250784542.1 | Uniprot ID | - |
| Organism | Latilactobacillus sakei strain TMW 1.3 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 864931..875275
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A4W81_RS04445 (A4W81_04380) | - | 867572..868876 (+) | 1305 | WP_082268166.1 | folylpolyglutamate synthase/dihydrofolate synthase family protein | - |
| A4W81_RS04450 (A4W81_04385) | - | 868877..869527 (+) | 651 | WP_016265026.1 | HAD family hydrolase | - |
| A4W81_RS04455 | radC | 869601..869930 (+) | 330 | WP_250784544.1 | UPF0758 domain-containing protein | Machinery gene |
| A4W81_RS04460 | ysxA/radC | 869931..870275 (+) | 345 | WP_250784542.1 | DNA repair protein RadC | Machinery gene |
| A4W81_RS04465 (A4W81_04395) | - | 870439..871443 (+) | 1005 | WP_011374556.1 | rod shape-determining protein | - |
| A4W81_RS04470 (A4W81_04400) | mreC | 871601..872461 (+) | 861 | WP_011374557.1 | rod shape-determining protein MreC | - |
| A4W81_RS04475 (A4W81_04405) | mreD | 872478..872993 (+) | 516 | WP_232320754.1 | rod shape-determining protein MreD | - |
| A4W81_RS04480 (A4W81_04410) | - | 873010..873681 (+) | 672 | WP_056948505.1 | septum site-determining protein MinC | - |
| A4W81_RS04485 (A4W81_04415) | minD | 873683..874477 (+) | 795 | WP_016265029.1 | septum site-determining protein MinD | - |
Sequence
Protein
Download Length: 114 a.a. Molecular weight: 12774.71 Da Isoelectric Point: 6.4705
>NTDB_id=160346 A4W81_RS04460 WP_250784542.1 869931..870275(+) (ysxA/radC) [Latilactobacillus sakei strain TMW 1.3]
MIESLAGETQEQLLAVYLDVKNQIIQIKQLYLGTLNSSVAHPREVFKWAVQYSAAKFILVHNHPSGQLAPSTQDINFTKR
IVNCGQLMGITCLDHLIIGSSQYLSLREEGYLVD
MIESLAGETQEQLLAVYLDVKNQIIQIKQLYLGTLNSSVAHPREVFKWAVQYSAAKFILVHNHPSGQLAPSTQDINFTKR
IVNCGQLMGITCLDHLIIGSSQYLSLREEGYLVD
Nucleotide
Download Length: 345 bp
>NTDB_id=160346 A4W81_RS04460 WP_250784542.1 869931..870275(+) (ysxA/radC) [Latilactobacillus sakei strain TMW 1.3]
ATGATTGAATCCTTAGCGGGAGAGACACAAGAACAGCTATTAGCGGTCTATTTAGATGTTAAAAATCAGATTATTCAGAT
TAAGCAACTCTATCTGGGCACACTTAATAGTTCTGTTGCACATCCGCGGGAAGTCTTCAAATGGGCGGTTCAGTATTCAG
CGGCTAAGTTTATCTTGGTCCATAATCACCCGAGCGGTCAATTGGCACCATCAACGCAAGATATTAACTTTACAAAAAGA
ATTGTTAATTGCGGACAGTTGATGGGGATTACTTGTTTGGATCATTTAATCATTGGTAGCTCACAGTACTTAAGCCTACG
TGAAGAAGGGTATCTAGTCGATTAA
ATGATTGAATCCTTAGCGGGAGAGACACAAGAACAGCTATTAGCGGTCTATTTAGATGTTAAAAATCAGATTATTCAGAT
TAAGCAACTCTATCTGGGCACACTTAATAGTTCTGTTGCACATCCGCGGGAAGTCTTCAAATGGGCGGTTCAGTATTCAG
CGGCTAAGTTTATCTTGGTCCATAATCACCCGAGCGGTCAATTGGCACCATCAACGCAAGATATTAACTTTACAAAAAGA
ATTGTTAATTGCGGACAGTTGATGGGGATTACTTGTTTGGATCATTTAATCATTGGTAGCTCACAGTACTTAAGCCTACG
TGAAGAAGGGTATCTAGTCGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ysxA/radC | Bacillus subtilis subsp. subtilis str. 168 |
51.786 |
98.246 |
0.509 |
| radC | Streptococcus pneumoniae TIGR4 |
44.248 |
99.123 |
0.439 |
| radC | Streptococcus pneumoniae R6 |
43.363 |
99.123 |
0.43 |
| radC | Streptococcus pneumoniae D39 |
43.363 |
99.123 |
0.43 |
| radC | Streptococcus gordonii str. Challis substr. CH1 |
43.363 |
99.123 |
0.43 |
| radC | Haemophilus influenzae Rd KW20 |
40.741 |
94.737 |
0.386 |