Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A4W81_RS04455 Genome accession   NZ_CP016465
Coordinates   869601..869930 (+) Length   109 a.a.
NCBI ID   WP_250784544.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 864601..874930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W81_RS04440 (A4W81_04375) - 864802..867450 (+) 2649 WP_011374552.1 valine--tRNA ligase -
  A4W81_RS04445 (A4W81_04380) - 867572..868876 (+) 1305 WP_082268166.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  A4W81_RS04450 (A4W81_04385) - 868877..869527 (+) 651 WP_016265026.1 HAD family hydrolase -
  A4W81_RS04455 radC 869601..869930 (+) 330 WP_250784544.1 UPF0758 domain-containing protein Machinery gene
  A4W81_RS04460 ysxA/radC 869931..870275 (+) 345 WP_250784542.1 DNA repair protein RadC Machinery gene
  A4W81_RS04465 (A4W81_04395) - 870439..871443 (+) 1005 WP_011374556.1 rod shape-determining protein -
  A4W81_RS04470 (A4W81_04400) mreC 871601..872461 (+) 861 WP_011374557.1 rod shape-determining protein MreC -
  A4W81_RS04475 (A4W81_04405) mreD 872478..872993 (+) 516 WP_232320754.1 rod shape-determining protein MreD -
  A4W81_RS04480 (A4W81_04410) - 873010..873681 (+) 672 WP_056948505.1 septum site-determining protein MinC -
  A4W81_RS04485 (A4W81_04415) minD 873683..874477 (+) 795 WP_016265029.1 septum site-determining protein MinD -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 12170.99 Da        Isoelectric Point: 6.9785

>NTDB_id=160345 A4W81_RS04455 WP_250784544.1 869601..869930(+) (radC) [Latilactobacillus sakei strain TMW 1.3]
MLTSQSKLQPREQVALYGAASLSDEQLATVILRSGTQHLPVEVVAQRLLQRYPDFQDLEQADLVQLRQIEGIGPVKAIEL
QAICELSRRIQNQRTLRFGVVASSQMVGQ

Nucleotide


Download         Length: 330 bp        

>NTDB_id=160345 A4W81_RS04455 WP_250784544.1 869601..869930(+) (radC) [Latilactobacillus sakei strain TMW 1.3]
ATGTTAACGAGTCAATCAAAGTTACAACCCAGAGAGCAAGTCGCACTGTATGGTGCGGCCAGTCTAAGTGATGAACAATT
AGCAACCGTAATTTTACGTTCAGGCACCCAACATTTACCCGTTGAAGTCGTTGCACAACGATTATTGCAACGGTACCCCG
ACTTTCAAGATCTTGAGCAAGCGGACTTAGTACAATTACGTCAAATCGAAGGTATTGGACCGGTTAAAGCGATTGAACTC
CAAGCGATTTGTGAGTTAAGTCGGCGCATTCAAAATCAGCGGACATTACGTTTTGGTGTAGTGGCTTCTAGTCAGATGGT
AGGCCAATGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(7-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

39.048

96.33

0.376
  radC Streptococcus pneumoniae R6

39.048

96.33

0.376
  radC Streptococcus pneumoniae D39

39.048

96.33

0.376