Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   APZ00_RS06370 Genome accession   NZ_CP013068
Coordinates   1358372..1359898 (+) Length   508 a.a.
NCBI ID   WP_058898400.1    Uniprot ID   A0A0U3E560
Organism   Pannonibacter phragmitetus strain 31801     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1353372..1364898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APZ00_RS06350 (APZ00_06350) - 1354240..1355082 (+) 843 WP_058898397.1 FkbM family methyltransferase -
  APZ00_RS06355 (APZ00_06355) - 1355138..1355920 (+) 783 WP_019964270.1 succinate dehydrogenase iron-sulfur subunit -
  APZ00_RS06360 (APZ00_06360) gshB 1356126..1357070 (+) 945 WP_058898398.1 glutathione synthase -
  APZ00_RS06365 (APZ00_06365) - 1357291..1358112 (-) 822 WP_058898399.1 cyclase family protein -
  APZ00_RS06370 (APZ00_06370) comM 1358372..1359898 (+) 1527 WP_058898400.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  APZ00_RS06375 (APZ00_06375) - 1360039..1360887 (+) 849 WP_247647866.1 AraC family transcriptional regulator -
  APZ00_RS06380 (APZ00_06380) - 1360988..1361359 (+) 372 WP_058898401.1 cupin domain-containing protein -
  APZ00_RS06385 (APZ00_06385) - 1361899..1363215 (-) 1317 WP_058898402.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  APZ00_RS06390 (APZ00_06390) accD 1363430..1364344 (-) 915 WP_058898403.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 53341.50 Da        Isoelectric Point: 7.5095

>NTDB_id=159551 APZ00_RS06370 WP_058898400.1 1358372..1359898(+) (comM) [Pannonibacter phragmitetus strain 31801]
MVSRVTTVAFQGIEAVPVDVQVQVGPGMVAFTVVGLPDKAVAESRERVRAALHASGLALPAKRVIVNLAPADLPKEGSHY
DLPIALGIMSAIGAIPPDMLADYVVLGELGLDGTLAPVAGVLPAAMGANGLGKGLICPEECGPEAAWADGEMSILAPRSL
IQLANHFKGTQVLSRPSPRLRGLPANLPDLADVKGQETAKRALEIAAAGGHNMLMVGPPGAGKSMLASRLASILPPLSPR
ELLEVSMIASLAGELADGKLTDRRPFRAPHHSASMAALVGGGLRARPGEVSLAHNGVLFLDELPEFQPQVLDSLRQPLEA
GETIIARANHRVTYPSRIQLIAAMNPCRCGHAGEPGHQCRRGPRCASEYQSRVSGPFLDRLDLRIEVPAVTASDLLTPGR
AESSAAVAERVAMARDQQAARYRALGLSARTNAQMPAAVVEEVVALDPSGRQFLTDAANSLSLSARGYHRVLKLARTLAD
LDGDPTVTRIHLAEALSYRGQDVLKQAA

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=159551 APZ00_RS06370 WP_058898400.1 1358372..1359898(+) (comM) [Pannonibacter phragmitetus strain 31801]
ATGGTAAGCCGGGTGACGACGGTCGCATTTCAGGGCATCGAGGCAGTGCCCGTTGATGTGCAGGTGCAGGTGGGGCCCGG
CATGGTGGCCTTCACCGTGGTGGGCCTGCCGGACAAGGCTGTGGCCGAAAGCCGGGAGCGGGTGCGCGCCGCCCTGCATG
CCTCGGGTCTGGCGCTGCCTGCCAAGCGGGTGATCGTCAATCTCGCTCCCGCCGATCTGCCGAAGGAAGGCTCCCACTAC
GACCTGCCGATTGCGCTGGGCATCATGTCCGCCATCGGCGCCATTCCTCCGGACATGCTGGCCGATTACGTGGTGCTGGG
GGAACTGGGGCTGGATGGCACGCTGGCGCCGGTGGCCGGAGTGCTGCCTGCGGCCATGGGCGCCAATGGGCTCGGCAAGG
GGCTGATCTGCCCGGAGGAATGCGGGCCGGAAGCGGCCTGGGCAGACGGGGAGATGTCCATTCTTGCGCCGCGCTCGCTG
ATCCAGCTGGCGAACCATTTCAAGGGCACGCAGGTGCTCTCCCGGCCTTCCCCGCGCCTGCGGGGCCTGCCCGCCAACCT
GCCGGACCTTGCCGATGTGAAGGGGCAGGAGACGGCCAAGCGCGCGCTGGAGATTGCCGCAGCCGGCGGCCACAACATGC
TGATGGTCGGCCCGCCGGGCGCGGGCAAGTCGATGCTGGCCAGCCGCCTTGCCTCCATCCTGCCGCCGCTGTCGCCAAGG
GAGCTGCTGGAAGTCTCGATGATTGCCTCCCTCGCCGGAGAGCTGGCCGATGGCAAGCTGACCGACCGGCGCCCCTTCCG
CGCGCCGCATCACTCGGCGTCTATGGCTGCGCTCGTCGGCGGCGGTTTGCGGGCACGTCCGGGGGAAGTGTCGCTCGCCC
ACAATGGCGTGCTCTTTCTGGATGAGCTGCCGGAGTTCCAGCCGCAGGTGCTCGACAGTCTGCGCCAGCCGCTGGAGGCA
GGCGAAACCATCATTGCCCGGGCCAATCACCGGGTCACCTATCCCTCGCGCATCCAGCTGATTGCGGCGATGAACCCCTG
CCGCTGCGGCCATGCGGGCGAGCCGGGGCACCAGTGCCGCCGGGGCCCGCGCTGCGCCAGCGAATATCAGTCCCGCGTCT
CGGGCCCCTTCCTCGACCGGCTCGACCTCAGGATCGAGGTTCCCGCCGTCACCGCCAGCGATCTGCTCACCCCCGGCCGC
GCGGAAAGCTCTGCCGCCGTGGCCGAAAGGGTGGCCATGGCCCGCGATCAGCAGGCGGCGCGCTACCGGGCGCTGGGCCT
TTCCGCCCGCACCAATGCGCAGATGCCGGCCGCCGTGGTGGAGGAGGTGGTGGCGCTGGACCCGTCAGGCCGCCAGTTCC
TCACCGATGCGGCCAACAGCCTCTCCCTCAGCGCCCGTGGCTATCACCGCGTGCTGAAACTCGCCCGCACCCTCGCCGAC
CTCGACGGCGACCCCACCGTCACCCGCATCCACCTCGCCGAGGCCCTCAGTTACAGGGGGCAGGATGTTCTCAAGCAGGC
GGCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-394)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U3E560

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

49.098

98.228

0.482
  comM Vibrio campbellii strain DS40M4

48.795

98.031

0.478
  comM Glaesserella parasuis strain SC1401

45.709

98.622

0.451
  comM Haemophilus influenzae Rd KW20

45.129

99.016

0.447
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.945

100

0.443
  comM Legionella pneumophila str. Paris

42.886

96.85

0.415
  comM Legionella pneumophila strain ERS1305867

42.886

96.85

0.415

Multiple sequence alignment