Detailed information NTG0157673

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: SanJ4211_RS01250
• Genome accession: NZ_CP012805
• Coordinates: 227795..228223 (+)
• Length: 142 a.a.
• NCBI ID: WP_021001232.1
• Uniprot ID: -
• Organism: Streptococcus anginosus strain J4211
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 222795..233223

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SanJ4211_RS01220 (SanJ4211_0215)	-	223248..223607 (+)	360	WP_003028467.1	MerR family transcriptional regulator	-
SanJ4211_RS01225 (SanJ4211_0216)	glnA	223646..224992 (+)	1347	WP_003027006.1	type I glutamate--ammonia ligase	-
SanJ4211_RS01230 (SanJ4211_0217)	-	225181..225546 (+)	366	WP_003027003.1	DUF1033 family protein	-
SanJ4211_RS01235 (SanJ4211_0218)	comYA	225616..226557 (+)	942	WP_003027001.1	competence type IV pilus ATPase ComGA	Machinery gene
SanJ4211_RS01240 (SanJ4211_0219)	comYB	226499..227521 (+)	1023	WP_041783985.1	competence type IV pilus assembly protein ComGB	Machinery gene
SanJ4211_RS01245 (SanJ4211_0220)	comYC	227518..227835 (+)	318	WP_003028473.1	competence type IV pilus major pilin ComGC	Machinery gene
SanJ4211_RS01250 (SanJ4211_0221)	comYD	227795..228223 (+)	429	WP_021001232.1	competence type IV pilus minor pilin ComGD	Machinery gene
SanJ4211_RS01255 (SanJ4211_0222)	comGE/cglE	228195..228488 (+)	294	WP_021001233.1	competence type IV pilus minor pilin ComGE	Machinery gene
SanJ4211_RS01260 (SanJ4211_0223)	comGF/cglF	228472..228909 (+)	438	WP_041783987.1	competence type IV pilus minor pilin ComGF	Machinery gene
SanJ4211_RS01265	comGG	228890..229216 (+)	327	WP_021001234.1	competence type IV pilus minor pilin ComGG	-
SanJ4211_RS01270 (SanJ4211_0225)	comYH	229288..230241 (+)	954	WP_021001235.1	class I SAM-dependent methyltransferase	Machinery gene
SanJ4211_RS01275 (SanJ4211_0226)	-	230288..231487 (+)	1200	WP_057489560.1	acetate kinase	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 16313.86 Da
• Isoelectric Point: 10.3825

>NTDB_id=157673 SanJ4211_RS01250 WP_021001232.1 227795..228223(+) (comYD) [Streptococcus anginosus strain J4211]
MRNIQKKLVLLQIKGFTLLESLLTLFITSFLLLAVSGSVRSSFEQVEEKIFFLEFEHFYRESQKLSSSAQIQLDMNFSRE
RISNGYNHLAVPRSIQAPEDLTLHFDKAGGNSSLGKIVFQTKKQTITYQLYLGNGKFKKTTR

Nucleotide

• Length: 429 bp

>NTDB_id=157673 SanJ4211_RS01250 WP_021001232.1 227795..228223(+) (comYD) [Streptococcus anginosus strain J4211]
ATGCGAAACATACAAAAGAAGCTCGTTCTGTTGCAGATTAAGGGATTTACGCTTTTGGAAAGTTTGCTGACATTATTTAT
AACGAGTTTCTTATTGCTTGCGGTGTCGGGCTCTGTTCGTTCTTCTTTTGAACAGGTGGAAGAGAAGATTTTCTTTCTGG
AGTTTGAGCATTTTTATCGGGAAAGTCAGAAGTTGAGTAGTTCAGCTCAAATTCAGTTGGACATGAATTTTTCTCGCGAG
AGGATTTCCAATGGTTACAACCATTTGGCGGTTCCTCGCTCGATTCAAGCGCCAGAAGATTTGACGCTTCATTTTGATAA
GGCTGGAGGCAATTCATCGCTCGGAAAGATTGTCTTTCAGACAAAAAAGCAGACAATTACGTATCAATTATATCTAGGAA
ATGGGAAATTTAAGAAAACAACACGTTAA

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus gordonii str. Challis substr. CH1	64.885	92.254	0.599
comGD/cglD	Streptococcus mitis NCTC 12261	57.364	90.845	0.521
comGD/cglD	Streptococcus mitis SK321	56.693	89.437	0.507
comGD/cglD	Streptococcus pneumoniae Rx1	56.693	89.437	0.507
comGD/cglD	Streptococcus pneumoniae D39	56.693	89.437	0.507
comGD/cglD	Streptococcus pneumoniae R6	56.693	89.437	0.507
comGD/cglD	Streptococcus pneumoniae TIGR4	55.906	89.437	0.5
comYD	Streptococcus mutans UA140	53.077	91.549	0.486
comYD	Streptococcus mutans UA159	53.077	91.549	0.486