Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   AN159_RS08380 Genome accession   NZ_CP012694
Coordinates   1583556..1584743 (-) Length   395 a.a.
NCBI ID   WP_002245787.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 331401     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1578556..1589743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AN159_RS08355 (AN159_08395) - 1578853..1579233 (-) 381 WP_002239423.1 helix-turn-helix domain-containing protein -
  AN159_RS08360 (AN159_08400) - 1579352..1579903 (+) 552 WP_002230190.1 hypothetical protein -
  AN159_RS08365 (AN159_08405) - 1579923..1580618 (+) 696 WP_002245789.1 hypothetical protein -
  AN159_RS08370 (AN159_08410) topA 1580727..1582997 (-) 2271 WP_069972502.1 type I DNA topoisomerase -
  AN159_RS08375 (AN159_08415) - 1583069..1583530 (-) 462 WP_002215351.1 DUF494 domain-containing protein -
  AN159_RS08380 (AN159_08420) dprA 1583556..1584743 (-) 1188 WP_002245787.1 DNA-processing protein DprA Machinery gene
  AN159_RS08385 (AN159_08425) - 1584834..1586111 (-) 1278 WP_069972503.1 sigma-54-dependent transcriptional regulator -
  AN159_RS08390 (AN159_08430) - 1586104..1588224 (-) 2121 WP_069972504.1 sensor histidine kinase -
  AN159_RS08395 (AN159_08435) - 1588224..1588823 (-) 600 WP_002216221.1 DUF4390 domain-containing protein -

Sequence


Protein


Download         Length: 395 a.a.        Molecular weight: 42042.22 Da        Isoelectric Point: 6.1732

>NTDB_id=156609 AN159_RS08380 WP_002245787.1 1583556..1584743(-) (dprA) [Neisseria meningitidis strain 331401]
MTEDERFAWLQLAFTPYIGAESFLLLMRRFGSAQNALSAPAEQVAALIRHKQALEAWRNAEKRALARQAAEAALEWEMRD
GCRLMLLQDEDFPEMLTQGLTAPPVLFLRGNVRLLHKPSAAIVGSRHATPQAMRIAKDFGKSLGGQNIPVVSGMASGIDT
AAHQGALEAEGGTIAVWGTGIDRIYPPSNKNLAYEIAEKGLIVSEFPIGTRPYAGNFPRRNRLIAALSQVTLVVEAALES
GSLITAGLAAEMGREVMAVPGSIDNPHSKGCHKLIKDGAKLVECLDDILNECPGLLQNTGASSYSINKDTPDTGRRAVQT
AYAPPPAAKMPSEAAAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELELDGSVAAMPGGRYQRIRT

Nucleotide


Download         Length: 1188 bp        

>NTDB_id=156609 AN159_RS08380 WP_002245787.1 1583556..1584743(-) (dprA) [Neisseria meningitidis strain 331401]
ATGACAGAGGACGAACGTTTCGCGTGGCTGCAATTGGCGTTTACGCCCTATATCGGCGCGGAAAGTTTCCTGCTGCTGAT
GCGCCGTTTCGGCAGCGCGCAAAATGCCCTGTCCGCACCGGCGGAACAGGTGGCGGCACTGATACGGCACAAACAGGCGC
TTGAGGCTTGGCGCAATGCGGAAAAACGCGCTCTGGCGCGGCAGGCGGCAGAAGCGGCGTTGGAATGGGAAATGCGGGAC
GGATGCCGCCTGATGCTGCTTCAGGATGAAGATTTCCCCGAAATGCTGACGCAGGGGCTGACCGCGCCGCCGGTTTTGTT
TTTGCGCGGCAACGTGCGGCTGCTGCACAAGCCTTCCGCCGCCATCGTCGGCAGCCGCCATGCCACGCCGCAGGCGATGC
GGATTGCCAAAGATTTCGGCAAGTCGTTGGGCGGGCAAAATATCCCCGTTGTGTCGGGTATGGCTTCCGGTATCGATACT
GCCGCCCATCAGGGCGCACTGGAGGCAGAAGGCGGCACCATCGCCGTGTGGGGGACGGGTATAGACCGCATTTACCCGCC
GTCCAATAAAAACCTTGCCTATGAAATCGCCGAAAAAGGATTGATTGTCAGCGAGTTTCCCATCGGTACGCGCCCGTATG
CCGGCAATTTTCCGCGCCGCAACCGCCTGATTGCCGCCCTGTCGCAAGTAACGCTGGTGGTTGAAGCCGCCTTGGAATCC
GGTTCGCTGATTACCGCCGGCCTGGCGGCAGAAATGGGGCGCGAAGTGATGGCGGTACCCGGTTCGATAGACAATCCGCA
CAGCAAAGGCTGCCACAAACTGATTAAAGACGGCGCAAAATTGGTGGAATGCCTGGACGACATCCTGAACGAATGCCCGG
GGCTATTGCAAAATACGGGTGCTTCATCATATTCTATAAATAAGGATACGCCCGACACGGGACGCCGCGCCGTTCAGACG
GCATACGCCCCGCCGCCTGCCGCAAAAATGCCGTCTGAAGCGGCGGCAGGCGGCACAGCCGTCGGCGGCATACTGGATAA
AATGGGTTTCGACCCCATCCATCCCGACGTGCTTGCCGGACAGTTGGCTATGCCTGCCGCAGATTTGTATGCCGCACTGT
TGGAATTGGAATTGGACGGCAGCGTTGCCGCAATGCCCGGCGGCAGATACCAGCGTATCCGAACTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae MS11

96.456

100

0.965

  dprA Neisseria gonorrhoeae strain FA1090

96.203

100

0.962

  dprA Neisseria meningitidis strain C311

91.94

100

0.924

  dprA Neisseria meningitidis MC58

91.94

100

0.924

  dprA Vibrio cholerae strain A1552

37.783

100

0.38

  dprA Glaesserella parasuis strain SC1401

41.935

86.329

0.362


Multiple sequence alignment