Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AOC03_RS06325 Genome accession   NZ_CP012678
Coordinates   1456430..1457971 (-) Length   513 a.a.
NCBI ID   WP_062534293.1    Uniprot ID   A0A0M4T2C0
Organism   Psychrobacter urativorans strain R310.10B     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1451430..1462971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOC03_RS06290 (AOC03_06275) - 1452067..1452435 (-) 369 WP_062534282.1 hypothetical protein -
  AOC03_RS06295 (AOC03_06280) hisH 1452602..1453246 (-) 645 WP_062534284.1 imidazole glycerol phosphate synthase subunit HisH -
  AOC03_RS06300 (AOC03_06285) hisB 1453247..1453930 (-) 684 WP_227514203.1 imidazoleglycerol-phosphate dehydratase HisB -
  AOC03_RS06305 (AOC03_06290) - 1454276..1454698 (+) 423 WP_062534285.1 acetyl-CoA sensor PanZ family protein -
  AOC03_RS06315 (AOC03_06300) - 1455130..1455627 (+) 498 WP_062534287.1 DUF4385 domain-containing protein -
  AOC03_RS06320 (AOC03_06305) - 1455703..1456398 (+) 696 WP_062534290.1 phosphoglycolate phosphatase -
  AOC03_RS06325 (AOC03_06310) comM 1456430..1457971 (-) 1542 WP_062534293.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AOC03_RS06330 (AOC03_06315) hemN 1458317..1459756 (+) 1440 WP_227514326.1 oxygen-independent coproporphyrinogen III oxidase -
  AOC03_RS06335 (AOC03_06320) - 1459851..1461299 (-) 1449 WP_062534297.1 esterase-like activity of phytase family protein -
  AOC03_RS06340 (AOC03_06325) - 1461536..1462396 (-) 861 WP_062534299.1 SPFH domain-containing protein -

Sequence

Protein


Download         Length: 513 a.a.        Molecular weight: 55117.87 Da        Isoelectric Point: 7.1827

>NTDB_id=156271 AOC03_RS06325 WP_062534293.1 1456430..1457971(-) (comM) [Psychrobacter urativorans strain R310.10B]
MSFAQVYTRSVVGLHAPQVIIEVHLSQGLPALTIVGLPAAAVRESKDRVRSAILNSGFQFPNRRLTINLAPADLPKDGAR
LDLPIAIGILAASGQLEPDVLSAFEFIGELALNGELRQVTGSLAVARAIKAESLKKESSVASAPLRQLIVPMANGSEASR
VEGVTVLAAQSLKDVCAHLQALAHPDGSLETQLPVVPLNCLQPSASYQVDLADVKGQHHARRALEIAAAGGHSLLFTGPP
GSGKTLMASRLPTILPDLSAEDALEVASTYSVADSDYDYGTRPFRQVHHTISAVALVGGGSRPKPGEITLANKGVLFLDE
LPEFERSVLEVLRQPLEAKQITISRANSQLTFPANFQLVAAMNPCPCGYDGDGSGRCRCRPEQIKRYQDKLSGPLLDRID
LHITVPALPIADLQNGTAGESSEQVRLRVDAAHKRQMARQQKVNNELSPSELDAHIQLGEGEKQLLQLAQQRLNLSARGY
HRVLRVARTIADLADNEHINSAHVSEALSYRSK

Nucleotide


Download         Length: 1542 bp        

>NTDB_id=156271 AOC03_RS06325 WP_062534293.1 1456430..1457971(-) (comM) [Psychrobacter urativorans strain R310.10B]
ATGTCGTTTGCTCAGGTTTATACCCGCTCAGTCGTTGGTCTGCACGCGCCGCAAGTTATTATTGAGGTGCATTTATCGCA
AGGGTTACCAGCGCTAACGATTGTAGGCTTGCCAGCCGCAGCGGTGCGCGAAAGTAAAGATAGGGTACGCTCGGCAATAT
TGAACTCAGGTTTTCAATTTCCCAATCGACGTTTAACCATTAATTTAGCGCCTGCTGATTTACCCAAAGATGGCGCGCGT
CTTGATTTGCCAATTGCCATTGGTATTTTGGCGGCAAGTGGTCAGCTTGAGCCTGATGTATTATCGGCATTTGAGTTTAT
TGGCGAATTGGCATTGAATGGCGAGCTGCGTCAAGTGACGGGTAGCCTTGCAGTAGCACGCGCCATAAAAGCCGAATCGC
TAAAAAAAGAATCGAGCGTCGCCAGCGCACCGTTACGACAATTGATTGTACCAATGGCTAATGGCAGTGAAGCCAGCCGT
GTTGAAGGCGTAACCGTATTAGCCGCGCAAAGTCTCAAAGACGTCTGTGCCCATCTACAAGCGCTTGCGCACCCTGACGG
GTCGCTAGAAACTCAGTTGCCGGTGGTGCCATTAAACTGTTTGCAACCAAGTGCCAGCTATCAGGTTGATTTAGCCGATG
TGAAAGGCCAGCATCATGCGCGGCGGGCGCTAGAGATTGCTGCGGCTGGTGGACATTCATTATTATTTACCGGACCGCCC
GGCTCTGGTAAAACCTTGATGGCATCACGATTACCGACCATCTTACCGGATTTGAGCGCGGAAGATGCATTAGAAGTTGC
CAGTACCTATTCGGTAGCAGACAGCGATTATGATTACGGTACGCGACCGTTTCGGCAAGTGCATCACACCATATCGGCAG
TGGCGCTAGTCGGTGGCGGCTCACGTCCAAAACCGGGTGAGATTACCTTAGCGAATAAGGGCGTATTGTTTTTAGATGAA
TTGCCAGAATTTGAGCGTAGCGTGTTAGAAGTATTGCGTCAGCCGTTAGAAGCCAAGCAAATTACCATTAGTCGTGCCAA
CTCACAGCTGACCTTTCCGGCTAATTTTCAGCTGGTTGCAGCAATGAATCCTTGTCCTTGTGGCTATGATGGTGATGGTT
CAGGGCGCTGCCGCTGCCGTCCGGAACAAATCAAACGTTATCAAGATAAGCTATCGGGACCGCTCCTTGACCGCATTGAC
TTACACATTACCGTACCTGCGTTACCGATTGCGGATTTGCAAAACGGCACGGCTGGGGAAAGCTCAGAACAAGTACGCCT
ACGTGTCGATGCTGCTCATAAACGGCAAATGGCGCGCCAACAGAAAGTAAATAATGAGCTGAGTCCGAGCGAGCTAGACG
CGCATATCCAATTGGGCGAGGGCGAAAAGCAGTTATTACAATTGGCACAGCAACGCCTCAATCTTTCTGCGCGCGGCTAT
CACCGTGTATTGCGCGTGGCACGGACGATTGCTGATTTGGCAGACAACGAGCACATCAATAGCGCCCATGTCTCCGAGGC
GCTCAGTTATCGTAGCAAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-135)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(210-410)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(419-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M4T2C0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

50.096

100

0.509
  comM Glaesserella parasuis strain SC1401

49.617

100

0.505
  comM Vibrio cholerae strain A1552

49.518

100

0.501
  comM Vibrio campbellii strain DS40M4

49.13

100

0.495
  comM Legionella pneumophila str. Paris

48.837

100

0.491
  comM Legionella pneumophila strain ERS1305867

48.837

100

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.561

100

0.441

Multiple sequence alignment