Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   RN80_RS02180 Genome accession   NZ_CP012646
Coordinates   412820..413482 (+) Length   220 a.a.
NCBI ID   WP_045612472.1    Uniprot ID   -
Organism   Streptococcus mitis strain KCOM 1350 (= ChDC B183)     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 407820..418482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN80_RS02155 (RN80_02165) tsf 408188..409228 (+) 1041 WP_060627333.1 translation elongation factor Ts -
  RN80_RS02160 (RN80_02170) cysK 409351..410277 (-) 927 WP_049521100.1 cysteine synthase A -
  RN80_RS02165 (RN80_02175) - 410374..410817 (-) 444 WP_060627334.1 PH domain-containing protein -
  RN80_RS02170 (RN80_02180) - 410833..411468 (-) 636 WP_060627335.1 YigZ family protein -
  RN80_RS02175 (RN80_02185) comFA/cflA 411525..412823 (+) 1299 WP_045612473.1 DEAD/DEAH box helicase Machinery gene
  RN80_RS02180 (RN80_02190) comFC/cflB 412820..413482 (+) 663 WP_045612472.1 ComF family protein Machinery gene
  RN80_RS02185 (RN80_02195) hpf 413562..414110 (+) 549 WP_004255322.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  RN80_RS02190 (RN80_02200) - 414246..416219 (+) 1974 WP_000715142.1 DHH family phosphoesterase -
  RN80_RS02195 (RN80_02205) rplI 416216..416668 (+) 453 WP_060627336.1 50S ribosomal protein L9 -
  RN80_RS02200 (RN80_02210) dnaB 416712..418064 (+) 1353 WP_060627337.1 replicative DNA helicase -
  RN80_RS02205 (RN80_02215) - 418066..418332 (+) 267 WP_001278169.1 Veg family protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25310.34 Da        Isoelectric Point: 7.7129

>NTDB_id=155994 RN80_RS02180 WP_045612472.1 412820..413482(+) (comFC/cflB) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MRCLLCGQTMKAVLTFSSLLLLRNDVSCLCLDCDSTFEKIGEEYCPNCMKTGLSTKCQDCQFWCKEGIEVSHRGIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASFLSEELKKYKEYQFVVIPLSPERLLERGFNQVEGLVEAAGFSFQDLLEKREERASSS
KNRSERLGTELPFFIKRGVTIPKKILLIDDIYTTGTTINRVKKLLEEAGAEDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=155994 RN80_RS02180 WP_045612472.1 412820..413482(+) (comFC/cflB) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
ATGAGGTGCTTATTGTGCGGGCAGACTATGAAGGCTGTTTTAACTTTTAGTAGTCTCTTACTTCTGAGGAATGATGTCTC
ATGTCTTTGTTTAGATTGTGATTCTACTTTTGAGAAAATTGGAGAAGAGTACTGTCCAAACTGTATGAAAACAGGATTGT
CAACAAAGTGTCAAGATTGTCAATTTTGGTGTAAAGAAGGAATTGAAGTCAGTCATAGAGGGATTTTTACTTACAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAGTTTGATGGAGACTTCCTTTTAAGAAAAGTTTTTGCTTCATTTTTAAGTGA
GGAGTTGAAAAAGTACAAAGAGTATCAATTTGTCGTAATTCCCCTAAGTCCTGAAAGATTACTTGAGAGGGGATTTAACC
AGGTTGAAGGTTTAGTTGAAGCAGCAGGGTTCTCTTTTCAAGACTTACTAGAGAAGAGAGAAGAGCGGGCCAGTTCTTCT
AAAAATCGTTCAGAACGCTTGGGGACAGAACTTCCTTTCTTTATTAAAAGGGGAGTCACTATTCCTAAAAAAATCCTACT
TATAGATGACATTTACACTACTGGAACAACTATAAATCGTGTGAAGAAACTGTTGGAAGAGGCTGGTGCTGAAGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(181-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

95

100

0.95
  comFC/cflB Streptococcus mitis NCTC 12261

91.364

100

0.914
  comFC/cflB Streptococcus pneumoniae TIGR4

90.909

100

0.909
  comFC/cflB Streptococcus pneumoniae Rx1

90.455

100

0.905
  comFC/cflB Streptococcus pneumoniae D39

90.455

100

0.905
  comFC/cflB Streptococcus pneumoniae R6

90.455

100

0.905
  comFC Bacillus subtilis subsp. subtilis str. 168

35.965

100

0.373

Multiple sequence alignment