Detailed information NTG0155631

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: AMD33_RS07840
• Genome accession: NZ_CP012588
• Coordinates: 1510561..1510989 (-)
• Length: 142 a.a.
• NCBI ID: WP_011226626.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain MN-BM-A01
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1505561..1515989

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AMD33_RS07800 (AMD33_07775)	-	1505699..1506142 (-)	444	WP_041829335.1	hypothetical protein	-
AMD33_RS11890 (AMD33_07780)	-	1506216..1506635 (-)	420	WP_014727721.1	CPBP family intramembrane glutamic endopeptidase	-
AMD33_RS07810 (AMD33_07785)	-	1506884..1507081 (-)	198	WP_014727723.1	helix-turn-helix transcriptional regulator	-
AMD33_RS07815 (AMD33_07790)	-	1507330..1508523 (-)	1194	WP_014608740.1	acetate kinase	-
AMD33_RS07820 (AMD33_07795)	comYH	1508579..1509535 (-)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
AMD33_RS07825 (AMD33_07800)	comGG	1509580..1509897 (-)	318	WP_002952035.1	competence type IV pilus minor pilin ComGG	-
AMD33_RS07830 (AMD33_07805)	comYF	1509875..1510312 (-)	438	WP_014608742.1	competence type IV pilus minor pilin ComGF	Machinery gene
AMD33_RS07835 (AMD33_07810)	comGE	1510296..1510589 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
AMD33_RS07840 (AMD33_07815)	comYD	1510561..1510989 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
AMD33_RS07845 (AMD33_07820)	comYC	1510949..1511275 (-)	327	WP_014727724.1	competence type IV pilus major pilin ComGC	Machinery gene
AMD33_RS07850 (AMD33_07825)	comYB	1511272..1512372 (-)	1101	WP_116920398.1	competence type IV pilus assembly protein ComGB	Machinery gene
AMD33_RS07855 (AMD33_07830)	comGA/cglA/cilD	1512254..1513195 (-)	942	WP_014727726.1	competence type IV pilus ATPase ComGA	Machinery gene
AMD33_RS07860 (AMD33_07835)	-	1513276..1513638 (-)	363	WP_014608746.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15859.45 Da
• Isoelectric Point: 10.3330

>NTDB_id=155631 AMD33_RS07840 WP_011226626.1 1510561..1510989(-) (comYD) [Streptococcus thermophilus strain MN-BM-A01]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=155631 AMD33_RS07840 WP_011226626.1 1510561..1510989(-) (comYD) [Streptococcus thermophilus strain MN-BM-A01]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTCAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCTAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	41.429	98.592	0.408
comGD/cglD	Streptococcus pneumoniae Rx1	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae D39	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae R6	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis NCTC 12261	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis SK321	43.307	89.437	0.387
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38