Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   AMD33_RS07820 Genome accession   NZ_CP012588
Coordinates   1508579..1509535 (-) Length   318 a.a.
NCBI ID   WP_011226622.1    Uniprot ID   A0A8D6XRE9
Organism   Streptococcus thermophilus strain MN-BM-A01     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1503579..1514535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD33_RS07790 (AMD33_07765) proC 1504140..1504910 (+) 771 WP_014727718.1 pyrroline-5-carboxylate reductase -
  AMD33_RS07795 (AMD33_07770) - 1504940..1505602 (-) 663 WP_014727719.1 CPBP family intramembrane glutamic endopeptidase -
  AMD33_RS07800 (AMD33_07775) - 1505699..1506142 (-) 444 WP_041829335.1 hypothetical protein -
  AMD33_RS11890 (AMD33_07780) - 1506216..1506635 (-) 420 WP_014727721.1 CPBP family intramembrane glutamic endopeptidase -
  AMD33_RS07810 (AMD33_07785) - 1506884..1507081 (-) 198 WP_014727723.1 helix-turn-helix transcriptional regulator -
  AMD33_RS07815 (AMD33_07790) - 1507330..1508523 (-) 1194 WP_014608740.1 acetate kinase -
  AMD33_RS07820 (AMD33_07795) comYH 1508579..1509535 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  AMD33_RS07825 (AMD33_07800) comGG 1509580..1509897 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  AMD33_RS07830 (AMD33_07805) comYF 1509875..1510312 (-) 438 WP_014608742.1 competence type IV pilus minor pilin ComGF Machinery gene
  AMD33_RS07835 (AMD33_07810) comGE 1510296..1510589 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  AMD33_RS07840 (AMD33_07815) comYD 1510561..1510989 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  AMD33_RS07845 (AMD33_07820) comYC 1510949..1511275 (-) 327 WP_014727724.1 competence type IV pilus major pilin ComGC Machinery gene
  AMD33_RS07850 (AMD33_07825) comYB 1511272..1512372 (-) 1101 WP_116920398.1 competence type IV pilus assembly protein ComGB Machinery gene
  AMD33_RS07855 (AMD33_07830) comGA/cglA/cilD 1512254..1513195 (-) 942 WP_014727726.1 competence type IV pilus ATPase ComGA Machinery gene
  AMD33_RS07860 (AMD33_07835) - 1513276..1513638 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35857.00 Da        Isoelectric Point: 4.7123

>NTDB_id=155629 AMD33_RS07820 WP_011226622.1 1508579..1509535(-) (comYH) [Streptococcus thermophilus strain MN-BM-A01]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=155629 AMD33_RS07820 WP_011226622.1 1508579..1509535(-) (comYH) [Streptococcus thermophilus strain MN-BM-A01]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682

Multiple sequence alignment