Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AK825_RS13890 Genome accession   NZ_CP012533
Coordinates   3381151..3382737 (-) Length   528 a.a.
NCBI ID   WP_068038728.1    Uniprot ID   -
Organism   Psychrobacter sp. P11G5     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3376151..3387737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AK825_RS13860 (AK825_13850) - 3376694..3377116 (+) 423 WP_068038710.1 acetyl-CoA sensor PanZ family protein -
  AK825_RS13870 (AK825_13860) - 3377426..3377800 (-) 375 WP_068038716.1 hypothetical protein -
  AK825_RS13875 (AK825_13865) - 3378006..3378506 (+) 501 WP_068038719.1 DUF4385 domain-containing protein -
  AK825_RS13880 (AK825_13870) - 3378651..3379328 (+) 678 WP_068038722.1 phosphoglycolate phosphatase -
  AK825_RS13885 (AK825_13875) - 3379429..3381138 (+) 1710 WP_068038725.1 formate--tetrahydrofolate ligase -
  AK825_RS13890 (AK825_13880) comM 3381151..3382737 (-) 1587 WP_068038728.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AK825_RS13895 (AK825_13885) - 3383303..3385750 (+) 2448 WP_068038730.1 penicillin acylase family protein -
  AK825_RS13900 (AK825_13890) hemN 3386198..3387736 (+) 1539 WP_068038733.1 oxygen-independent coproporphyrinogen III oxidase -

Sequence

Protein


Download         Length: 528 a.a.        Molecular weight: 57250.06 Da        Isoelectric Point: 6.8642

>NTDB_id=155024 AK825_RS13890 WP_068038728.1 3381151..3382737(-) (comM) [Psychrobacter sp. P11G5]
MSFAQVYTRSVVGLHAPKVIIEVHLSQGLPALTIVGLPEAAVRESKDRVRSAILNSGFQFPNRRLTINLAPADLPKDGAR
LDLPIAIGILAASDQLDPEVLSGFEFIGELALNGNLRQVTGSLAVARAIKAEALALKTSKVSKASKSNEQQLNEQLQEPQ
AAQLIVPIDNGAEASRVEGVEILAADSLKAVCDHLQSLTNPNATYERLEVVQPSPTQQHAGYKVDLADVKGQHHARRALE
IAAAGGHSLLFTGPPGSGKTLMASRLPTILPDLSDEDALEVASTYSVADSDYDYGTRPFRQVHHTISAVALVGGGSRPKP
GEITLANKGVLFLDELPEFDRTVLEVLRQPLEAKQITISRANSQMTFPANFQLVAAMNPCPCGYDGDTSGRCRCRPEQIK
RYQDKLSGPLLDRIDLHITVPALPIADLQNAQAGETSEQVRTRVAVAHKHQLKRQQKVNNELSPSEIDKYIQLGEGEQQL
LQLAQQRLNLSARGYHRVLRVARTIADLADSIDITSAHVSEALSYRSK

Nucleotide


Download         Length: 1587 bp        

>NTDB_id=155024 AK825_RS13890 WP_068038728.1 3381151..3382737(-) (comM) [Psychrobacter sp. P11G5]
ATGTCGTTTGCCCAAGTCTATACCCGTTCAGTCGTCGGTTTGCATGCCCCAAAGGTCATCATTGAAGTTCATTTGTCGCA
AGGCCTGCCAGCGTTAACGATTGTGGGTCTACCAGAAGCCGCCGTACGCGAGAGCAAAGATAGAGTGCGCTCAGCGATTC
TTAATTCAGGATTTCAGTTTCCTAATCGTCGCCTAACGATTAATTTGGCACCGGCAGACCTGCCCAAAGATGGCGCAAGG
CTAGATTTGCCGATTGCCATTGGTATTTTGGCAGCCAGTGATCAATTGGATCCAGAAGTATTATCAGGGTTTGAGTTTAT
CGGTGAGCTTGCGTTAAATGGAAATTTGCGGCAAGTGACAGGTAGCTTGGCTGTCGCTCGAGCAATAAAAGCGGAAGCGT
TAGCCTTAAAAACGTCAAAAGTATCGAAGGCGTCAAAAAGTAATGAACAACAGCTGAATGAGCAACTGCAAGAACCACAA
GCAGCGCAGTTAATCGTACCGATAGATAATGGAGCTGAGGCTAGCCGTGTCGAAGGGGTAGAGATATTGGCGGCGGATAG
TCTAAAAGCCGTTTGCGATCATTTGCAATCACTAACAAATCCAAATGCTACTTATGAGCGTTTAGAGGTCGTTCAGCCCA
GTCCGACACAGCAACATGCAGGTTATAAAGTAGATTTGGCAGATGTCAAAGGTCAACATCATGCTAGACGTGCTTTAGAA
ATCGCCGCTGCAGGTGGTCACTCTCTGTTATTTACAGGGCCACCTGGTTCGGGCAAGACGTTGATGGCATCGCGGCTACC
GACTATCCTGCCTGATTTAAGTGACGAGGACGCGTTAGAGGTTGCCAGTACCTATTCAGTGGCAGATAGTGATTACGATT
ATGGTACGCGCCCATTTAGACAAGTGCATCATACCATCTCAGCCGTGGCATTGGTTGGTGGTGGCTCACGTCCGAAACCT
GGTGAGATTACCCTTGCGAATAAGGGCGTTTTATTCCTTGATGAATTACCAGAATTCGATCGTACCGTGTTAGAAGTATT
ACGCCAGCCGTTAGAAGCGAAGCAAATCACTATTAGCCGTGCCAACTCGCAGATGACCTTTCCAGCAAACTTTCAACTGG
TGGCGGCGATGAATCCTTGCCCTTGCGGATATGATGGCGATACATCAGGCCGTTGTCGTTGCCGACCTGAACAGATTAAG
CGCTATCAAGATAAACTATCAGGCCCGCTACTTGATCGTATTGATTTGCATATTACTGTGCCAGCGTTACCGATTGCAGA
CCTGCAAAACGCTCAAGCTGGCGAAACATCTGAGCAGGTACGCACTCGAGTAGCTGTTGCTCATAAGCATCAGTTAAAGC
GACAACAGAAAGTAAACAACGAGCTGAGCCCTAGCGAGATTGATAAATATATTCAGTTGGGCGAGGGCGAGCAGCAATTA
CTACAGCTAGCTCAGCAACGCTTGAATCTATCTGCCCGTGGTTACCATAGAGTATTGCGAGTCGCGCGCACTATCGCTGA
TCTTGCCGATAGTATCGACATTACTAGCGCCCATGTGTCTGAGGCGCTGAGTTATCGTAGTAAGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(225-425)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(434-526)

Subunit ChlI of Mg-chelatase (ChlI)

(21-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

49.624

100

0.5
  comM Glaesserella parasuis strain SC1401

48.218

100

0.487
  comM Legionella pneumophila strain ERS1305867

48.211

100

0.485
  comM Legionella pneumophila str. Paris

48.211

100

0.485
  comM Vibrio cholerae strain A1552

48.12

100

0.485
  comM Vibrio campbellii strain DS40M4

47.556

100

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.697

100

0.432

Multiple sequence alignment