Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CLAU_RS10240 Genome accession   NZ_CP012395
Coordinates   2247684..2248124 (-) Length   146 a.a.
NCBI ID   WP_013240841.1    Uniprot ID   A0A1A6AQ48
Organism   Clostridium autoethanogenum DSM 10061     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2242684..2253124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLAU_RS10215 (CLAU_2047) rplI 2243477..2243920 (-) 444 WP_013240836.1 50S ribosomal protein L9 -
  CLAU_RS10220 (CLAU_2048) - 2243921..2245906 (-) 1986 WP_013240837.1 DHH family phosphoesterase -
  CLAU_RS10225 (CLAU_2049) - 2245925..2246911 (-) 987 WP_013240838.1 YybS family protein -
  CLAU_RS10230 (CLAU_2050) - 2246923..2247240 (-) 318 WP_013240839.1 MazG-like family protein -
  CLAU_RS10235 (CLAU_2051) rpsR 2247405..2247662 (-) 258 WP_013240840.1 30S ribosomal protein S18 -
  CLAU_RS10240 (CLAU_2052) ssbA 2247684..2248124 (-) 441 WP_013240841.1 single-stranded DNA-binding protein Machinery gene
  CLAU_RS10245 (CLAU_2053) rpsF 2248137..2248424 (-) 288 WP_013240842.1 30S ribosomal protein S6 -
  CLAU_RS10250 (CLAU_2054) - 2248529..2248741 (-) 213 WP_013240843.1 DUF951 domain-containing protein -
  CLAU_RS10255 (CLAU_2055) - 2248745..2249635 (-) 891 WP_013240844.1 mechanosensitive ion channel family protein -
  CLAU_RS10260 (CLAU_2056) - 2249651..2249902 (-) 252 WP_013240845.1 DUF3343 domain-containing protein -
  CLAU_RS10265 (CLAU_2057) ytvI 2250359..2251414 (+) 1056 WP_013240846.1 sporulation integral membrane protein YtvI -
  CLAU_RS10270 (CLAU_2058) yyaC 2251493..2252080 (+) 588 WP_013240847.1 spore protease YyaC -
  CLAU_RS10275 (CLAU_2059) - 2252094..2252324 (-) 231 WP_013240848.1 YkuS family protein -
  CLAU_RS10280 (CLAU_2060) - 2252381..2252884 (-) 504 WP_013240849.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16410.28 Da        Isoelectric Point: 4.8280

>NTDB_id=154246 CLAU_RS10240 WP_013240841.1 2247684..2248124(-) (ssbA) [Clostridium autoethanogenum DSM 10061]
MNKVVLIGRLTKDPELRFTPGNGTAVTTFTIAVDRRFSKDGQKEADFIPIVVWGKQAESTANYMSKGKLIGISGRIQTRN
YEAKDGTRRYVTEVIAEEVQFLEWGEKSAKNSYNQTSSENFGKTQNFDENIYGEDITPVDDGDIPF

Nucleotide


Download         Length: 441 bp        

>NTDB_id=154246 CLAU_RS10240 WP_013240841.1 2247684..2248124(-) (ssbA) [Clostridium autoethanogenum DSM 10061]
TTGAATAAGGTTGTTTTAATTGGAAGATTAACCAAAGATCCAGAATTGAGATTTACACCAGGAAATGGTACAGCAGTTAC
CACTTTTACTATAGCCGTTGATAGGAGATTTTCTAAAGATGGGCAAAAAGAGGCAGATTTTATCCCTATAGTTGTATGGG
GAAAACAAGCTGAATCTACTGCAAATTATATGAGTAAAGGAAAACTTATAGGTATTAGTGGTAGAATCCAGACTAGAAAT
TATGAAGCTAAAGACGGTACTAGAAGATATGTTACTGAGGTTATTGCAGAAGAAGTTCAATTCCTAGAATGGGGAGAGAA
ATCTGCAAAGAACTCATATAATCAAACTTCATCTGAAAATTTTGGAAAAACTCAAAACTTTGATGAGAATATTTATGGAG
AGGATATTACTCCAGTAGATGATGGAGATATACCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A6AQ48

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.093

100

0.555
  ssb Latilactobacillus sakei subsp. sakei 23K

46.565

89.726

0.418
  ssbB Streptococcus sobrinus strain NIDR 6715-7

49.573

80.137

0.397
  ssbA Streptococcus mutans UA159

48.333

82.192

0.397
  ssbB Bacillus subtilis subsp. subtilis str. 168

52.427

70.548

0.37
  ssb Vibrio cholerae strain A1552

30.508

100

0.37

Multiple sequence alignment