Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FORC36_RS15030 Genome accession   NZ_CP015512
Coordinates   3116589..3117776 (-) Length   395 a.a.
NCBI ID   WP_013570941.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_036     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3111589..3122776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC36_RS15000 (FORC36_2785) - 3111760..3112170 (+) 411 WP_011079172.1 flagellar basal body-associated protein FliL -
  FORC36_RS15005 (FORC36_2786) glpG 3112219..3113061 (-) 843 WP_039552146.1 rhomboid family intramembrane serine protease GlpG -
  FORC36_RS15010 (FORC36_2787) glpE 3113146..3113466 (-) 321 WP_011079170.1 thiosulfate sulfurtransferase GlpE -
  FORC36_RS15015 (FORC36_2788) rpoH 3113902..3114759 (-) 858 WP_011079169.1 RNA polymerase sigma factor RpoH -
  FORC36_RS15020 (FORC36_2789) ftsX 3114936..3115904 (-) 969 WP_011079168.1 permease-like cell division protein FtsX -
  FORC36_RS15025 (FORC36_2790) ftsE 3115891..3116568 (-) 678 WP_011079167.1 cell division ATP-binding protein FtsE -
  FORC36_RS15030 (FORC36_2791) pilA 3116589..3117776 (-) 1188 WP_013570941.1 signal recognition particle-docking protein FtsY Machinery gene
  FORC36_RS15035 (FORC36_2792) rsmD 3117982..3118575 (+) 594 WP_011079165.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  FORC36_RS15040 (FORC36_2793) - 3118594..3118860 (+) 267 WP_011079164.1 DUF1145 domain-containing protein -
  FORC36_RS15045 (FORC36_2794) - 3118926..3119519 (-) 594 WP_011079163.1 YhgN family NAAT transporter -
  FORC36_RS15050 (FORC36_2795) - 3119712..3119933 (-) 222 WP_011149125.1 YecH family metal-binding protein -
  FORC36_RS15055 (FORC36_2796) - 3120010..3120630 (-) 621 WP_011079161.1 lysoplasmalogenase -
  FORC36_RS15060 (FORC36_2797) - 3121663..3122031 (-) 369 WP_103185177.1 DUF4145 domain-containing protein -
  FORC36_RS15065 (FORC36_2798) - 3122267..3122596 (+) 330 WP_039552135.1 DUF2500 domain-containing protein -

Sequence

Protein


Download         Length: 395 a.a.        Molecular weight: 43103.93 Da        Isoelectric Point: 4.4147

>NTDB_id=154062 FORC36_RS15030 WP_013570941.1 3116589..3117776(-) (pilA) [Vibrio vulnificus strain FORC_036]
MTEKKKRGLLSWLGFGDDDQVKQPEPAQSEEVISESDEKTVESVEPIASQEVVEEAAAEPISEPAAEEPVEATPVVVEAP
RVQEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLVADVGMDTTLKIIENLTEKASRRDLKD
GEALYGLLKEEMAEILSKVEQPLQVDSSKTPYVILMVGVNGVGKTTTIGKLAKQFQNQGKKVMLAAGDTFRAAAVEQLQV
WGERNNVPVIAQHTGADSASVIYDAIEAAKARGVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAG
TGQNAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFNIPIRYIGVGEGIEDLRPFETQEFIDALFSREE

Nucleotide


Download         Length: 1188 bp        

>NTDB_id=154062 FORC36_RS15030 WP_013570941.1 3116589..3117776(-) (pilA) [Vibrio vulnificus strain FORC_036]
ATGACGGAAAAGAAAAAGCGCGGATTACTATCGTGGCTTGGCTTTGGTGACGATGACCAAGTAAAACAACCAGAGCCGGC
ACAATCAGAAGAGGTGATCAGCGAGTCTGACGAAAAAACCGTAGAGAGCGTTGAACCGATTGCCAGTCAAGAAGTGGTTG
AAGAGGCGGCGGCAGAGCCAATCAGCGAACCAGCAGCTGAAGAACCCGTTGAAGCGACACCTGTGGTGGTTGAAGCACCG
CGCGTGCAAGAACAAGAAAAACCAACAGAAAGCTTTTTTGCGCGTCTAAAACGTAGCTTGAGCCGCACGAAAGCCAATAT
CGGTGCTGGTTTCTTTGGCCTATTTAAAGGCAAGAAAATCGATGATGATTTGTTTGAAGAGTTGGAAGAACAGCTACTCG
TTGCGGATGTGGGTATGGATACCACGTTGAAAATCATCGAAAACTTAACAGAAAAAGCGTCTCGCCGTGACTTAAAAGAT
GGGGAGGCTCTGTATGGTTTGCTCAAAGAAGAGATGGCGGAGATCCTCTCTAAGGTTGAGCAACCATTGCAAGTGGACAG
CAGCAAAACCCCTTACGTTATCCTGATGGTCGGGGTAAATGGTGTGGGTAAGACCACCACCATTGGTAAGTTGGCGAAAC
AGTTCCAAAATCAAGGTAAGAAAGTGATGTTGGCGGCGGGCGATACCTTCCGTGCGGCGGCCGTTGAGCAGTTGCAAGTG
TGGGGCGAGCGTAACAATGTCCCAGTAATCGCGCAGCATACTGGCGCAGACAGTGCATCGGTGATTTATGATGCGATTGA
AGCCGCCAAAGCGCGTGGCGTTGATGTGGTGATCGCCGATACTGCGGGTCGCTTGCAAAACAAGAGCAACTTGATGGAAG
AGCTGCGCAAAATTGTCCGAGTGATGAAGAAAATCGACGACTCCGCACCGCATGAAATCATGTTGACCTTGGATGCGGGC
ACTGGTCAGAACGCCATCAGCCAAGCGAAACTGTTTAGCGATGTCGCGCCGATCACCGGGATCACCTTGACCAAACTGGA
TGGCACTGCGAAAGGCGGCGTGATCTTTGCTATTGCCGATCAGTTTAACATTCCTATTCGTTACATCGGTGTGGGTGAAG
GGATTGAGGATCTCCGCCCGTTTGAAACCCAAGAATTTATCGACGCGCTATTTAGTCGAGAAGAGTAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(111-172)

SRP54-type protein, GTPase domain (SRP54)

(192-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.03

91.392

0.448

Multiple sequence alignment