Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DE8669_RS02240 Genome accession   NZ_CP012391
Coordinates   415631..417127 (+) Length   498 a.a.
NCBI ID   WP_014582481.1    Uniprot ID   -
Organism   Neisseria meningitidis strain DE8669     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 410631..422127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DE8669_RS13550 - 413031..413198 (+) 168 WP_009346312.1 hypothetical protein -
  DE8669_RS02225 (DE8669_0406) putP 413288..414814 (-) 1527 WP_002216504.1 sodium/proline symporter PutP -
  DE8669_RS02235 (DE8669_0407) - 415297..415617 (+) 321 WP_002216505.1 accessory factor UbiK family protein -
  DE8669_RS02240 (DE8669_0408) comM 415631..417127 (+) 1497 WP_014582481.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DE8669_RS02245 (DE8669_0409) ftsN 417233..418078 (+) 846 WP_014582480.1 cell division protein FtsN -
  DE8669_RS02250 (DE8669_0410) dsbA1 418081..418725 (+) 645 WP_014582479.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  DE8669_RS02255 (DE8669_0411) - 418758..419579 (+) 822 WP_002226074.1 undecaprenyl-diphosphate phosphatase -
  DE8669_RS02270 (DE8669_0412) - 420161..421351 (-) 1191 WP_050584727.1 class I SAM-dependent methyltransferase -
  DE8669_RS02275 (DE8669_0413) mraZ 421657..422112 (+) 456 WP_002218779.1 division/cell wall cluster transcriptional repressor MraZ -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53599.75 Da        Isoelectric Point: 7.0035

>NTDB_id=154062 DE8669_RS02240 WP_014582481.1 415631..417127(+) (comM) [Neisseria meningitidis strain DE8669]
MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKESRDRVRAAIIQSGFEFPAKKITVNLAPADLPKESGR
FDLPIAIGILAASGQVAPEKLAEYEFAGELALSGLLRPVRGALAMAWQGMQAKRAFVLPEENAGQAAVMRGITVYGARSL
GEVAAHLNGIEPLVQTDCQVPQMPSENTKLLDLVDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
TEDELVEVWALRSLLPNHQQQLDSNRPFRSPHHSASAAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPVKPCRCTPESVARYRSKISGPLLDRIDLTIEVPSLSAAELMQQ
EAGESSVSVLERVIAARDKQYARQGKVNAALSVSELDTSARIQKEAQEALGGLLEKLSLSARSFHRIMRVARTLADLAGD
EEVGRSHVMKAIGFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=154062 DE8669_RS02240 WP_014582481.1 415631..417127(+) (comM) [Neisseria meningitidis strain DE8669]
ATGTCGCTTGCCTTGGTTTACAGCCGCGCCTTGAGCGGTATGAATGCGCCGTTGGTCGAAGTGGAAGCCCACCTTGCCAA
CGGCCTGCCGCATTTCAACATCGTCGGGCTGCCCGATACGGAAGTAAAGGAAAGTCGCGACCGCGTCCGTGCCGCCATTA
TTCAAAGCGGTTTTGAATTCCCCGCCAAAAAAATTACCGTCAACCTCGCCCCCGCCGACCTGCCCAAAGAGTCGGGGCGT
TTCGATTTGCCGATTGCAATTGGCATCCTTGCCGCATCGGGGCAGGTTGCACCCGAAAAACTGGCGGAATACGAGTTTGC
GGGGGAATTGGCACTGTCGGGGCTGTTGCGCCCCGTGCGTGGCGCGTTGGCGATGGCGTGGCAGGGTATGCAGGCAAAAC
GTGCATTTGTTTTGCCTGAAGAAAACGCAGGACAAGCCGCCGTGATGCGCGGCATTACCGTTTACGGCGCGCGCTCTTTG
GGCGAAGTCGCCGCCCATTTGAACGGTATCGAACCTTTGGTGCAAACCGACTGTCAAGTTCCTCAGATGCCGTCTGAAAA
CACCAAATTGCTCGACCTCGTCGATGTCAAGGGTCAGCACACTGCCCGCCTTGCTTTGGAAATCGCTGCCGCAGGCGGAC
ACAGCCTTTTGATGATGGGTCCGCCGGGAACGGGCAAGTCTATGCTCTCCCAACGGCTGCCCGGCATCCTGCCGCCGCTG
ACCGAAGACGAATTGGTAGAAGTTTGGGCATTGCGTTCGCTCCTGCCCAACCACCAGCAACAACTCGACAGCAACCGTCC
TTTCCGCAGTCCGCATCACAGCGCCAGCGCGGCGGCTATGGTCGGCGGCGGTTCGGATCCGCGTCCGGGCGAAATTTCAT
TGGCGCATCACGGCGTTTTATTTTTGGATGAATTGCCCGAGTTCGACCGCAAAGTTTTGGAAGTTTTGCGCGAACCGTTG
GAAAACGGCGAAATCCACATTTCCCGAGCGGCGCGCCAAGCCGTCTATCCCGCCAAATTCCAACTTGTCGCCGCCATGAA
CCCCTGCCCGTGCGGCTATCTCGGGCATCCCGTCAAACCCTGCCGCTGCACGCCCGAAAGCGTCGCGCGTTACCGCAGCA
AAATTTCCGGCCCGCTGCTCGACCGCATCGATTTGACCATCGAAGTCCCCAGCCTGTCCGCCGCCGAACTGATGCAGCAG
GAAGCGGGTGAAAGCAGCGTGTCCGTTTTGGAACGCGTTATCGCCGCCCGCGACAAACAATACGCACGGCAAGGCAAAGT
GAATGCCGCCTTGAGTGTCAGTGAACTCGACACATCCGCCCGCATTCAAAAAGAAGCGCAGGAAGCATTGGGCGGCCTGC
TGGAAAAACTCTCCCTTTCCGCCCGCAGCTTCCACCGCATTATGCGCGTGGCGCGTACATTGGCGGATTTGGCGGGCGAC
GAAGAAGTCGGCAGAAGCCACGTCATGAAAGCCATAGGTTTCCGTCGCGCTTTATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.789

100

0.532
  comM Vibrio campbellii strain DS40M4

52.113

99.799

0.52
  comM Haemophilus influenzae Rd KW20

49.499

100

0.496
  comM Glaesserella parasuis strain SC1401

49.203

100

0.496
  comM Legionella pneumophila str. Paris

46.575

100

0.478
  comM Legionella pneumophila strain ERS1305867

46.575

100

0.478
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.942

100

0.434

Multiple sequence alignment