Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   DE8669_RS02250 Genome accession   NZ_CP012391
Coordinates   418081..418725 (+) Length   214 a.a.
NCBI ID   WP_014582479.1    Uniprot ID   -
Organism   Neisseria meningitidis strain DE8669     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 413081..423725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DE8669_RS02225 (DE8669_0406) putP 413288..414814 (-) 1527 WP_002216504.1 sodium/proline symporter PutP -
  DE8669_RS02235 (DE8669_0407) - 415297..415617 (+) 321 WP_002216505.1 accessory factor UbiK family protein -
  DE8669_RS02240 (DE8669_0408) comM 415631..417127 (+) 1497 WP_014582481.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DE8669_RS02245 (DE8669_0409) ftsN 417233..418078 (+) 846 WP_014582480.1 cell division protein FtsN -
  DE8669_RS02250 (DE8669_0410) dsbA1 418081..418725 (+) 645 WP_014582479.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  DE8669_RS02255 (DE8669_0411) - 418758..419579 (+) 822 WP_002226074.1 undecaprenyl-diphosphate phosphatase -
  DE8669_RS02270 (DE8669_0412) - 420161..421351 (-) 1191 WP_050584727.1 class I SAM-dependent methyltransferase -
  DE8669_RS02275 (DE8669_0413) mraZ 421657..422112 (+) 456 WP_002218779.1 division/cell wall cluster transcriptional repressor MraZ -
  DE8669_RS02280 (DE8669_0414) rsmH 422109..423095 (+) 987 WP_002218781.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  DE8669_RS02285 (DE8669_0415) ftsL 423092..423355 (+) 264 WP_002232818.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23868.85 Da        Isoelectric Point: 9.7103

>NTDB_id=154063 DE8669_RS02250 WP_014582479.1 418081..418725(+) (dsbA1) [Neisseria meningitidis strain DE8669]
MKLKHLLPLLLSAVLSAQAYALTEGEDYLVLDKPIPQEQSGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEH
VVWQPEMLGLARMAAAVNLSGLKYQANPAVFKAVYEQKIRLENRAVAGKWALSQKGFDGKKLMRAYDSPEAAAAALKMQK
LTEQYGIDSTPTVIVGGKYRVIFNNGFDGGVHTIKELVAKVREERKRQTPAVQK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=154063 DE8669_RS02250 WP_014582479.1 418081..418725(+) (dsbA1) [Neisseria meningitidis strain DE8669]
ATGAAGCTCAAACATCTGTTGCCGCTGCTGCTGTCGGCAGTGTTGTCCGCGCAGGCATATGCCCTGACGGAAGGGGAAGA
CTATCTTGTGTTGGATAAACCCATTCCTCAAGAACAGTCGGGTAAAATTGAGGTTTTGGAATTTTTCGGCTATTTCTGCG
TACATTGCCATCATTTCGATCCTTTGTTATTGAAATTGGGCAAGGCATTGCCGTCTGATGCCTATTTGAGGACGGAGCAC
GTGGTCTGGCAGCCTGAAATGCTCGGTCTGGCCAGGATGGCGGCTGCCGTCAATTTGTCGGGTTTGAAATATCAGGCAAA
CCCTGCTGTGTTTAAAGCAGTTTACGAACAAAAAATCCGCTTGGAAAACAGGGCTGTTGCCGGAAAATGGGCTTTGTCTC
AAAAAGGCTTTGACGGCAAAAAACTGATGCGCGCCTATGATTCCCCCGAAGCTGCCGCCGCCGCATTAAAAATGCAGAAA
CTGACGGAACAATATGGTATTGACAGCACGCCGACCGTTATTGTCGGCGGAAAATACCGCGTTATCTTCAATAATGGCTT
TGACGGCGGCGTTCATACGATTAAAGAATTGGTTGCCAAAGTCAGGGAAGAACGCAAGCGTCAGACCCCTGCTGTACAGA
AATAG

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(42-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

57.219

87.383

0.5
  dsbA2 Neisseria meningitidis MC58

51.613

86.916

0.449

Multiple sequence alignment