Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | AL038_RS10130 | Genome accession | NZ_CP012373 |
| Coordinates | 2426522..2427784 (+) | Length | 420 a.a. |
| NCBI ID | WP_062152445.1 | Uniprot ID | A0A2N9YGU7 |
| Organism | Beggiatoa leptomitoformis strain D-402 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2421522..2432784
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL038_RS10115 (AL038_10045) | trpE | 2422374..2423858 (+) | 1485 | WP_062152441.1 | anthranilate synthase component I | - |
| AL038_RS10120 (AL038_10050) | - | 2423878..2424462 (+) | 585 | WP_201800074.1 | anthranilate synthase component II | - |
| AL038_RS10125 (AL038_10055) | pilB | 2424791..2426515 (+) | 1725 | WP_062152443.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AL038_RS10130 (AL038_10060) | pilC | 2426522..2427784 (+) | 1263 | WP_062152445.1 | type II secretion system F family protein | Machinery gene |
| AL038_RS10135 (AL038_10065) | pilD | 2427790..2428689 (+) | 900 | WP_062152447.1 | prepilin peptidase | Machinery gene |
| AL038_RS10140 (AL038_10070) | coaE | 2428686..2429306 (+) | 621 | WP_062152449.1 | dephospho-CoA kinase | - |
| AL038_RS10145 (AL038_10075) | zapD | 2429335..2430114 (+) | 780 | WP_062152451.1 | cell division protein ZapD | - |
| AL038_RS10150 (AL038_18980) | - | 2430227..2431045 (+) | 819 | WP_062152453.1 | response regulator | - |
| AL038_RS10155 (AL038_10085) | - | 2431189..2431554 (+) | 366 | WP_002691300.1 | response regulator | - |
Sequence
Protein
Download Length: 420 a.a. Molecular weight: 45291.52 Da Isoelectric Point: 9.5025
>NTDB_id=153923 AL038_RS10130 WP_062152445.1 2426522..2427784(+) (pilC) [Beggiatoa leptomitoformis strain D-402]
MAEIAKKTADKGGVKSPKTEIFVWEGKDKQGKKIKGEQTGTSEILVKAILRKQGVNPTRVRKKPKPLLGGGGGGKPITAS
DIAVFARQLTTMMGAGVPLIQAFDIVAQGQENPRMQKMLLEIKTTVEAGGTLADGLRQHPNEFDALFCNLVEAGEQAGAL
ESLLDKVATYKEKTEGIKKKIKKALTYPIAVVVVAFIITAILMIFVVPVFADLFKGFGADLPALTQFVVDLSNLFVTYWY
IIFGVAIGGVIAFSQAKKRILAFDHFLQRLSLKMPIFGDLIGKSAVARFARTMATMFAAGTPMVEAMDSVAGATGNIVYF
DAVMQIKDDVSTGTALATSMRNQGKIWPNMMIQMVQIGEESGALETMLSKVADFYEEEVDALVDAMSSLLEPMIMAFLGI
VIGGLVVAMYLPIFKMGSVV
MAEIAKKTADKGGVKSPKTEIFVWEGKDKQGKKIKGEQTGTSEILVKAILRKQGVNPTRVRKKPKPLLGGGGGGKPITAS
DIAVFARQLTTMMGAGVPLIQAFDIVAQGQENPRMQKMLLEIKTTVEAGGTLADGLRQHPNEFDALFCNLVEAGEQAGAL
ESLLDKVATYKEKTEGIKKKIKKALTYPIAVVVVAFIITAILMIFVVPVFADLFKGFGADLPALTQFVVDLSNLFVTYWY
IIFGVAIGGVIAFSQAKKRILAFDHFLQRLSLKMPIFGDLIGKSAVARFARTMATMFAAGTPMVEAMDSVAGATGNIVYF
DAVMQIKDDVSTGTALATSMRNQGKIWPNMMIQMVQIGEESGALETMLSKVADFYEEEVDALVDAMSSLLEPMIMAFLGI
VIGGLVVAMYLPIFKMGSVV
Nucleotide
Download Length: 1263 bp
>NTDB_id=153923 AL038_RS10130 WP_062152445.1 2426522..2427784(+) (pilC) [Beggiatoa leptomitoformis strain D-402]
ATGGCAGAAATTGCAAAGAAAACCGCTGATAAGGGTGGGGTTAAATCCCCTAAAACCGAGATTTTTGTTTGGGAAGGTAA
GGACAAACAAGGTAAAAAAATCAAAGGTGAACAAACAGGCACCAGTGAGATTTTGGTAAAAGCCATTTTACGTAAGCAAG
GCGTAAACCCCACACGAGTACGTAAGAAGCCTAAGCCTTTACTGGGCGGGGGTGGGGGAGGTAAACCTATCACGGCATCA
GATATTGCCGTATTCGCGCGCCAATTGACCACCATGATGGGTGCAGGTGTGCCTTTAATTCAAGCCTTTGATATTGTTGC
GCAAGGGCAAGAAAATCCTCGTATGCAAAAAATGTTGTTAGAAATTAAAACAACCGTCGAAGCAGGTGGCACGTTAGCCG
ACGGCTTACGGCAACATCCCAACGAATTTGATGCACTCTTTTGTAACCTTGTAGAAGCAGGGGAACAAGCAGGGGCATTA
GAATCGTTACTAGATAAGGTTGCAACGTATAAAGAAAAAACCGAAGGTATTAAGAAAAAAATCAAAAAAGCACTGACTTA
TCCTATCGCAGTCGTAGTGGTTGCATTTATTATTACCGCTATTTTGATGATTTTCGTCGTACCCGTCTTTGCTGACTTAT
TTAAAGGCTTTGGTGCTGATTTGCCCGCACTGACTCAATTTGTAGTGGATTTATCTAATTTATTCGTCACATACTGGTAC
ATTATCTTTGGGGTAGCCATCGGAGGCGTTATTGCCTTTAGCCAAGCAAAAAAACGAATCCTAGCATTTGATCATTTTTT
ACAGCGACTGTCTTTAAAAATGCCCATTTTTGGTGATTTGATTGGTAAATCAGCCGTTGCGCGCTTTGCACGAACAATGG
CAACCATGTTTGCAGCAGGTACACCGATGGTGGAAGCAATGGACTCTGTTGCAGGCGCAACAGGTAATATTGTTTATTTT
GACGCAGTTATGCAAATTAAAGATGATGTTTCAACAGGGACAGCCCTTGCAACCAGTATGCGAAATCAAGGCAAAATTTG
GCCAAATATGATGATACAAATGGTACAAATTGGTGAAGAATCGGGTGCATTAGAAACCATGCTTAGTAAAGTTGCCGATT
TCTACGAAGAAGAAGTTGATGCATTGGTTGACGCAATGAGTAGCTTATTAGAACCCATGATTATGGCGTTCTTAGGGATT
GTCATTGGTGGTTTGGTCGTGGCAATGTACTTACCAATTTTCAAAATGGGGTCGGTCGTCTAA
ATGGCAGAAATTGCAAAGAAAACCGCTGATAAGGGTGGGGTTAAATCCCCTAAAACCGAGATTTTTGTTTGGGAAGGTAA
GGACAAACAAGGTAAAAAAATCAAAGGTGAACAAACAGGCACCAGTGAGATTTTGGTAAAAGCCATTTTACGTAAGCAAG
GCGTAAACCCCACACGAGTACGTAAGAAGCCTAAGCCTTTACTGGGCGGGGGTGGGGGAGGTAAACCTATCACGGCATCA
GATATTGCCGTATTCGCGCGCCAATTGACCACCATGATGGGTGCAGGTGTGCCTTTAATTCAAGCCTTTGATATTGTTGC
GCAAGGGCAAGAAAATCCTCGTATGCAAAAAATGTTGTTAGAAATTAAAACAACCGTCGAAGCAGGTGGCACGTTAGCCG
ACGGCTTACGGCAACATCCCAACGAATTTGATGCACTCTTTTGTAACCTTGTAGAAGCAGGGGAACAAGCAGGGGCATTA
GAATCGTTACTAGATAAGGTTGCAACGTATAAAGAAAAAACCGAAGGTATTAAGAAAAAAATCAAAAAAGCACTGACTTA
TCCTATCGCAGTCGTAGTGGTTGCATTTATTATTACCGCTATTTTGATGATTTTCGTCGTACCCGTCTTTGCTGACTTAT
TTAAAGGCTTTGGTGCTGATTTGCCCGCACTGACTCAATTTGTAGTGGATTTATCTAATTTATTCGTCACATACTGGTAC
ATTATCTTTGGGGTAGCCATCGGAGGCGTTATTGCCTTTAGCCAAGCAAAAAAACGAATCCTAGCATTTGATCATTTTTT
ACAGCGACTGTCTTTAAAAATGCCCATTTTTGGTGATTTGATTGGTAAATCAGCCGTTGCGCGCTTTGCACGAACAATGG
CAACCATGTTTGCAGCAGGTACACCGATGGTGGAAGCAATGGACTCTGTTGCAGGCGCAACAGGTAATATTGTTTATTTT
GACGCAGTTATGCAAATTAAAGATGATGTTTCAACAGGGACAGCCCTTGCAACCAGTATGCGAAATCAAGGCAAAATTTG
GCCAAATATGATGATACAAATGGTACAAATTGGTGAAGAATCGGGTGCATTAGAAACCATGCTTAGTAAAGTTGCCGATT
TCTACGAAGAAGAAGTTGATGCATTGGTTGACGCAATGAGTAGCTTATTAGAACCCATGATTATGGCGTTCTTAGGGATT
GTCATTGGTGGTTTGGTCGTGGCAATGTACTTACCAATTTTCAAAATGGGGTCGGTCGTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Legionella pneumophila strain ERS1305867 |
57.494 |
96.905 |
0.557 |
| pilC | Pseudomonas stutzeri DSM 10701 |
57.143 |
96.667 |
0.552 |
| pilC | Acinetobacter baumannii D1279779 |
55.388 |
95 |
0.526 |
| pilC | Acinetobacter baylyi ADP1 |
54.25 |
95.238 |
0.517 |
| pilG | Neisseria meningitidis 44/76-A |
45.823 |
99.762 |
0.457 |
| pilG | Neisseria gonorrhoeae MS11 |
45.585 |
99.762 |
0.455 |
| pilC | Vibrio cholerae strain A1552 |
39.098 |
95 |
0.371 |