Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   F822_RS11175 Genome accession   NZ_CP012371
Coordinates   2498703..2498999 (+) Length   98 a.a.
NCBI ID   WP_025041197.1    Uniprot ID   -
Organism   Nitrosospira briensis C-128     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2493703..2503999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F822_RS11155 ssb 2493816..2494280 (+) 465 WP_025041201.1 single-stranded DNA-binding protein Machinery gene
  F822_RS11160 - 2494937..2496235 (+) 1299 WP_025041200.1 DNA methylase -
  F822_RS11165 - 2496236..2496916 (-) 681 WP_156304406.1 MAE_28990/MAE_18760 family HEPN-like nuclease -
  F822_RS11170 - 2496943..2497989 (-) 1047 WP_025041198.1 DUF262 domain-containing protein -
  F822_RS11175 comE 2498703..2498999 (+) 297 WP_025041197.1 helix-hairpin-helix domain-containing protein Machinery gene
  F822_RS11180 cysM 2499196..2500083 (+) 888 WP_025041196.1 cysteine synthase CysM -
  F822_RS11185 - 2500192..2502252 (+) 2061 WP_025041195.1 hypothetical protein -
  F822_RS11190 - 2502259..2502519 (+) 261 WP_025041194.1 hypothetical protein -
  F822_RS11195 - 2502530..2502952 (+) 423 WP_025041193.1 YdbL family protein -
  F822_RS11200 - 2503022..2503795 (+) 774 WP_025041192.1 3'-5' exonuclease -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10444.26 Da        Isoelectric Point: 10.8739

>NTDB_id=153896 F822_RS11175 WP_025041197.1 2498703..2498999(+) (comE) [Nitrosospira briensis C-128]
MRKILTIVLVTLFAFTGAAYAAVNINTATQAELETLQGIGPTKAKAIIDHRKKNGSFKSADDLEKVNGIGPATLKRLRKD
IAVGGATTVKKENKPVPK

Nucleotide


Download         Length: 297 bp        

>NTDB_id=153896 F822_RS11175 WP_025041197.1 2498703..2498999(+) (comE) [Nitrosospira briensis C-128]
ATGAGAAAAATCCTGACAATTGTTTTGGTTACGCTGTTCGCATTTACCGGCGCAGCCTACGCGGCTGTTAACATCAATAC
TGCAACCCAGGCCGAGCTTGAAACGCTTCAGGGAATTGGTCCGACCAAAGCCAAGGCCATCATCGATCATCGCAAGAAGA
ATGGATCTTTCAAGTCGGCTGATGACCTGGAAAAGGTCAACGGCATCGGCCCTGCTACGCTGAAGCGGTTGCGCAAGGAC
ATAGCAGTGGGTGGCGCTACTACGGTTAAGAAAGAAAATAAACCTGTCCCCAAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(22-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

54.167

97.959

0.531
  comE Neisseria gonorrhoeae MS11

54.167

97.959

0.531
  comE Neisseria gonorrhoeae MS11

54.167

97.959

0.531
  comE Neisseria gonorrhoeae MS11

54.167

97.959

0.531
  comEA Vibrio parahaemolyticus RIMD 2210633

44.828

88.776

0.398
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.684

77.551

0.378

Multiple sequence alignment