Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   F822_RS11155 Genome accession   NZ_CP012371
Coordinates   2493816..2494280 (+) Length   154 a.a.
NCBI ID   WP_025041201.1    Uniprot ID   -
Organism   Nitrosospira briensis C-128     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2488816..2499280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F822_RS11145 uvrA 2489424..2492285 (-) 2862 WP_025041203.1 excinuclease ABC subunit UvrA -
  F822_RS11150 - 2492458..2493816 (+) 1359 WP_025041202.1 MFS transporter -
  F822_RS11155 ssb 2493816..2494280 (+) 465 WP_025041201.1 single-stranded DNA-binding protein Machinery gene
  F822_RS11160 - 2494937..2496235 (+) 1299 WP_025041200.1 DNA methylase -
  F822_RS11165 - 2496236..2496916 (-) 681 WP_156304406.1 MAE_28990/MAE_18760 family HEPN-like nuclease -
  F822_RS11170 - 2496943..2497989 (-) 1047 WP_025041198.1 DUF262 domain-containing protein -
  F822_RS11175 comE 2498703..2498999 (+) 297 WP_025041197.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17073.03 Da        Isoelectric Point: 5.3741

>NTDB_id=153895 F822_RS11155 WP_025041201.1 2493816..2494280(+) (ssb) [Nitrosospira briensis C-128]
MASVNKVILIGNLGKDPETRYMPNGDAVTNITLATTENWKDKNGEKQEKTEWHRVTFYRKLAEIAGEYLKKGRPVYVEGR
LETRKWTDKAGVERYTTDIIASDMKMLGSKPGSAGFDSDREGRDEGSFAPSPSGSKAPAKSSSGFDDMDDDIPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=153895 F822_RS11155 WP_025041201.1 2493816..2494280(+) (ssb) [Nitrosospira briensis C-128]
ATGGCATCAGTCAACAAGGTAATACTCATTGGCAATCTCGGTAAAGACCCCGAGACGCGTTATATGCCAAATGGCGACGC
CGTGACCAATATCACTTTGGCAACCACGGAAAATTGGAAGGATAAAAACGGCGAAAAACAGGAAAAAACCGAATGGCATC
GCGTCACCTTTTATCGCAAGCTTGCTGAAATCGCCGGCGAATACCTGAAAAAAGGCCGTCCGGTATATGTGGAGGGACGG
TTGGAAACGCGCAAGTGGACTGACAAGGCGGGTGTTGAGCGCTATACCACCGACATCATCGCCAGCGATATGAAGATGCT
GGGTAGCAAACCCGGCAGCGCCGGTTTTGATTCGGATAGGGAAGGGCGGGACGAGGGCAGTTTCGCGCCGAGCCCGTCGG
GGAGTAAAGCCCCTGCTAAAAGCAGCAGTGGGTTTGACGATATGGATGATGATATTCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.901

100

0.578
  ssb Neisseria meningitidis MC58

49.133

100

0.552
  ssb Neisseria gonorrhoeae MS11

47.399

100

0.532
  ssb Glaesserella parasuis strain SC1401

43.094

100

0.506

Multiple sequence alignment