Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   ADU72_RS04825 Genome accession   NZ_CP012288
Coordinates   1030733..1031989 (-) Length   418 a.a.
NCBI ID   WP_056986211.1    Uniprot ID   -
Organism   Pediococcus damnosus strain TMW 2.1535     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1025733..1036989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ADU72_RS04805 (ADU72_1129) - 1025912..1027084 (-) 1173 WP_010620873.1 IS256 family transposase -
  ADU72_RS12710 (ADU72_1130) - 1027169..1027381 (-) 213 WP_145974415.1 UvrD-helicase domain-containing protein -
  ADU72_RS04815 (ADU72_1131) - 1027378..1029495 (-) 2118 WP_056986209.1 AAA family ATPase -
  ADU72_RS04820 (ADU72_1132) rlmH 1029582..1030061 (-) 480 WP_046872136.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  ADU72_RS04825 (ADU72_1133) htrA 1030733..1031989 (-) 1257 WP_056986211.1 S1C family serine protease Regulator
  ADU72_RS04830 (ADU72_1134) - 1032101..1032904 (-) 804 WP_046872134.1 MBL fold metallo-hydrolase -
  ADU72_RS04835 (ADU72_1135) - 1032992..1034071 (-) 1080 WP_062904518.1 two-component system regulatory protein YycI -
  ADU72_RS04840 (ADU72_1136) - 1034086..1035408 (-) 1323 WP_046872133.1 YycH family regulatory protein -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 43190.54 Da        Isoelectric Point: 10.0013

>NTDB_id=153223 ADU72_RS04825 WP_056986211.1 1030733..1031989(-) (htrA) [Pediococcus damnosus strain TMW 2.1535]
MKNKNLWTVIVTALIAGLIGGGIAFGVGNYINNRQAESETAVPSGSNSTGTTKTSNVNVNVSSQSEKAYSSIKNAVVTVI
NLKKESSNSNNSLYGSIFGNSSSSSNSSSKSNNLETYAEGSGVIYKKSGNAAYVVTNNHVISGSNAVEIIMSNGKKLSAK
VVGKDSVTDLAVLKINSSEVSTVASFGNSNSIKVGETALAIGSPLGSDYATSLTQGIISAKKRTVATTNESGQETGEATV
IQTDAAINSGNSGGPLINLAGQVVGINSMKLASSGSSGTSVEGMGFAIPSNEVVTIINQLIEKGKIVRPAIGASLLDLTD
ITASQQKSILKLPSKVTEGAVIYNTYASSPARNAGLKKYDVVTNLDGTKITSVATLRDKLYKLKVGDSVKISWYRGSTLK
TGIIKLTETTSELSSQDK

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=153223 ADU72_RS04825 WP_056986211.1 1030733..1031989(-) (htrA) [Pediococcus damnosus strain TMW 2.1535]
ATGAAAAATAAAAACTTATGGACCGTCATTGTTACGGCGTTGATTGCTGGTTTAATTGGCGGTGGTATTGCGTTTGGAGT
CGGCAATTACATTAATAATCGGCAAGCAGAATCAGAAACGGCCGTTCCAAGTGGCTCAAATAGTACAGGAACAACAAAGA
CAAGTAATGTGAATGTCAATGTTAGCAGCCAGTCTGAAAAGGCGTACAGCAGCATAAAAAACGCGGTTGTGACAGTTATT
AATTTAAAGAAGGAAAGTTCAAATTCAAATAACAGTCTTTACGGATCAATCTTTGGGAATTCGTCCTCAAGTTCTAACTC
GAGTTCAAAATCCAACAATTTGGAAACATATGCAGAAGGTTCTGGAGTTATTTATAAAAAGAGTGGTAACGCTGCTTATG
TAGTTACGAATAATCATGTGATTTCTGGTTCTAATGCTGTTGAAATTATCATGAGTAATGGTAAAAAATTATCTGCTAAG
GTCGTTGGAAAAGATAGTGTGACCGACTTAGCAGTTTTGAAGATCAATTCCTCAGAAGTTTCGACAGTTGCTAGTTTCGG
AAATTCCAACAGTATTAAAGTTGGTGAAACAGCCTTGGCCATTGGGTCACCACTGGGCTCCGACTATGCAACATCATTAA
CGCAAGGAATTATTTCAGCTAAGAAACGAACAGTTGCAACAACGAATGAATCTGGTCAAGAGACCGGTGAAGCAACGGTT
ATTCAAACAGATGCTGCCATTAACTCTGGTAACTCTGGCGGTCCGCTGATTAACTTAGCAGGACAAGTTGTGGGGATTAA
CTCCATGAAGCTTGCAAGCAGTGGTTCTTCGGGTACAAGCGTGGAAGGAATGGGATTTGCGATTCCTTCGAATGAAGTTG
TGACAATAATTAATCAATTGATTGAAAAAGGTAAGATTGTTCGACCAGCAATTGGGGCTTCGTTGCTAGATCTAACAGAT
ATTACGGCTAGTCAACAAAAATCAATTCTTAAACTACCTTCTAAGGTAACTGAAGGGGCAGTCATTTATAATACGTATGC
TAGTTCACCAGCACGCAATGCTGGTTTGAAGAAGTACGATGTTGTTACAAATCTAGATGGCACTAAGATCACAAGTGTGG
CTACTTTGAGAGATAAGCTATATAAGCTCAAAGTTGGCGATTCAGTTAAAATTAGTTGGTACCGTGGTAGTACGCTAAAA
ACAGGAATCATTAAACTAACAGAAACAACAAGTGAATTAAGTTCACAAGATAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M50 (Peptidase_M50)

(214-404)

PDZ domain (PDZ_2)

(309-405)

Trypsin-like peptidase domain (Trypsin_2)

(120-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

49.024

98.086

0.481
  htrA Streptococcus mitis NCTC 12261

44.634

98.086

0.438
  htrA Streptococcus gordonii str. Challis substr. CH1

42.191

100

0.433
  htrA Streptococcus pneumoniae TIGR4

46.154

87.081

0.402
  htrA Streptococcus pneumoniae D39

46.154

87.081

0.402
  htrA Streptococcus pneumoniae Rx1

46.154

87.081

0.402
  htrA Streptococcus pneumoniae R6

46.154

87.081

0.402

Multiple sequence alignment