Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD1   Type   Regulator
Locus tag   V471_RS11065 Genome accession   NZ_CP015283
Coordinates   846115..846624 (-) Length   169 a.a.
NCBI ID   WP_198166466.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ATCC 25975     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 841115..851624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V471_RS04420 (V471_04355) comA/nlmT 841160..843316 (+) 2157 WP_002883725.1 peptide cleavage/export ABC transporter Regulator
  V471_RS04425 (V471_04360) - 843401..844378 (+) 978 WP_232326838.1 HlyD family efflux transporter periplasmic adaptor subunit -
  V471_RS11300 comD/blpH 844466..844636 (-) 171 WP_157108264.1 GHKL domain-containing protein Regulator
  V471_RS04430 (V471_04365) - 844739..845125 (-) 387 WP_045768432.1 IS110 family transposase -
  V471_RS04435 (V471_04370) - 845145..845906 (-) 762 WP_049529073.1 IS110 family transposase -
  V471_RS11065 comD/comD1 846115..846624 (-) 510 WP_198166466.1 GHKL domain-containing protein Regulator
  V471_RS04445 (V471_04380) comE/blpR 847278..848015 (-) 738 WP_002883766.1 LytR/AlgR family response regulator transcription factor Regulator
  V471_RS04450 (V471_04385) - 848744..849556 (-) 813 WP_002889987.1 HAD family hydrolase -
  V471_RS04455 (V471_04390) - 849765..851186 (+) 1422 WP_002883789.1 NCS2 family permease -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 19683.76 Da        Isoelectric Point: 6.4870

>NTDB_id=153208 V471_RS11065 WP_198166466.1 846115..846624(-) (comD/comD1) [Streptococcus salivarius strain ATCC 25975]
MQEELNLQNNIRLKNLDTYNHKIEELYQTVRGFRHNYRNLLTTLKLGIDQEDMTIVKDIYTSILETSDKRLETKQFDLTQ
LINIQDNTLKSLLSAKFLQADDQNIDISLEIPSPITLEGMTILDFITVISILIDNAMEATVKAKKTKIMIAYIKQDKYQR
FIIKNSKQA

Nucleotide


Download         Length: 510 bp        

>NTDB_id=153208 V471_RS11065 WP_198166466.1 846115..846624(-) (comD/comD1) [Streptococcus salivarius strain ATCC 25975]
ATGCAAGAAGAACTAAATCTACAAAACAATATCAGGCTAAAAAATCTCGATACCTACAATCATAAAATTGAAGAGCTTTA
TCAAACCGTCCGTGGTTTTCGTCATAATTATAGAAACCTACTTACCACTCTGAAACTAGGCATTGATCAGGAAGACATGA
CAATAGTCAAGGATATCTACACTTCGATTTTGGAAACATCTGATAAAAGACTAGAAACCAAGCAATTTGACTTGACACAA
CTAATCAATATCCAAGATAATACTCTAAAAAGCCTCCTATCTGCCAAATTTCTCCAAGCAGATGACCAAAATATTGATAT
CTCCCTAGAAATTCCAAGTCCTATCACGTTAGAGGGAATGACTATTCTGGACTTTATCACTGTTATCTCTATACTGATAG
ACAATGCCATGGAAGCTACTGTAAAAGCTAAAAAAACTAAGATAATGATTGCTTATATTAAACAGGATAAATATCAACGC
TTCATTATCAAAAACTCTAAGCAGGCTTAG

Domains

Predicted by InterProScan.

GHKL domain (HATPase_c_5)

(121-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD1 Streptococcus equinus JB1

42.169

98.225

0.414
  comD/comD3 Streptococcus equinus JB1

41.916

98.817

0.414
  comD/blpH Streptococcus mutans UA159

39.759

98.225

0.391
  comD/comD2 Streptococcus equinus JB1

41.139

93.491

0.385

Multiple sequence alignment