Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ADU71_RS08435 Genome accession   NZ_CP012283
Coordinates   1748958..1750082 (+) Length   374 a.a.
NCBI ID   WP_062904162.1    Uniprot ID   -
Organism   Pediococcus damnosus strain TMW 2.1534     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1743958..1755082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ADU71_RS08410 (ADU71_1730) - 1744369..1745247 (+) 879 WP_062904159.1 helix-turn-helix domain-containing protein -
  ADU71_RS08415 (ADU71_1731) pgsA 1745262..1745846 (+) 585 WP_062904160.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ADU71_RS08420 (ADU71_1732) - 1745952..1747175 (+) 1224 WP_046870904.1 competence/damage-inducible protein A -
  ADU71_RS08425 (ADU71_1733) - 1747265..1747483 (+) 219 Protein_1640 DNA recombination/repair protein RecA -
  ADU71_RS08430 (ADU71_1734) - 1747645..1748868 (+) 1224 WP_046870904.1 competence/damage-inducible protein A -
  ADU71_RS08435 (ADU71_1735) recA 1748958..1750082 (+) 1125 WP_062904162.1 recombinase RecA Machinery gene
  ADU71_RS08440 (ADU71_1736) rny 1750304..1751863 (+) 1560 WP_062904163.1 ribonuclease Y -
  ADU71_RS11705 (ADU71_1737) mutS 1752021..1753571 (+) 1551 WP_420899028.1 DNA mismatch repair protein MutS -
  ADU71_RS11710 (ADU71_1738) - 1753873..1754661 (+) 789 WP_420899031.1 MutS-related protein -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40707.08 Da        Isoelectric Point: 5.4350

>NTDB_id=153208 ADU71_RS08435 WP_062904162.1 1748958..1750082(+) (recA) [Pediococcus damnosus strain TMW 2.1534]
MADDQRKAALDAALKKIEKNFGKGSIMRMGDSAQTQISTISTGSLALDDALGVGGYPRGRIVEVYGPESSGKTTVALHAV
AQVQKEGGTAAYIDAENALDPVYAEHLGVNIDDLLLSQPDSGEEGLEITDALVSSGAVDLVVVDSVAALVPRAEIEGEMG
DAHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPEVTPGGRALKFYATIRLEIRRAEQIKDGTNIIGN
RVRIKVVKNKVAPPFKRAEVDIMYGHGISQTGEIIDMAVEKDIVDKSGSWYSYGDERIGQGRENAKQYLEDNPEKREEIY
KKVRAAYGMDETAEEKDEEEEQKKTKAKEKAKGKAKKEKSDPSKLDLEPSDKNK

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=153208 ADU71_RS08435 WP_062904162.1 1748958..1750082(+) (recA) [Pediococcus damnosus strain TMW 2.1534]
TTGGCTGATGATCAAAGAAAAGCAGCATTAGATGCTGCGCTTAAAAAAATCGAAAAGAATTTTGGTAAGGGGTCTATTAT
GCGAATGGGTGATTCTGCCCAAACGCAGATTTCTACCATTTCTACTGGCTCATTAGCATTGGATGATGCACTTGGTGTGG
GTGGCTACCCGCGTGGAAGAATCGTTGAAGTTTATGGACCAGAAAGTTCAGGAAAAACAACGGTTGCATTGCATGCAGTT
GCTCAAGTACAAAAGGAAGGCGGCACAGCAGCTTATATTGATGCAGAAAATGCGTTAGATCCTGTTTATGCAGAGCATTT
AGGCGTTAATATTGATGACTTGCTGTTATCTCAACCGGACTCAGGTGAAGAAGGTCTTGAAATCACCGATGCATTAGTAT
CTAGTGGTGCTGTTGATTTGGTTGTTGTTGATTCAGTTGCGGCATTGGTTCCTCGTGCAGAAATTGAGGGTGAAATGGGT
GATGCTCATGTTGGCCTTCAAGCTCGTCTCATGTCACAGGCTCTTCGTAAGCTTTCTGGTTCTATCAATAAAACGAAGAC
GATTGCCATTTTTATTAATCAAATTCGTGAAAAAGTTGGGGTTATGTTTGGTAATCCTGAGGTCACACCTGGTGGACGGG
CTTTGAAATTCTATGCAACAATTCGATTAGAGATTCGTCGTGCAGAACAAATTAAAGATGGTACGAATATTATTGGAAAT
CGAGTTCGAATCAAGGTTGTTAAAAACAAGGTTGCGCCTCCATTTAAACGTGCCGAGGTCGATATCATGTACGGGCATGG
AATTTCCCAAACCGGAGAAATTATTGATATGGCTGTTGAGAAAGATATCGTTGATAAAAGTGGTTCTTGGTATTCATATG
GTGATGAACGAATTGGACAGGGCCGTGAAAATGCTAAGCAATATTTAGAAGATAACCCTGAAAAAAGAGAAGAAATTTAC
AAAAAAGTTCGTGCAGCCTATGGGATGGATGAAACAGCTGAAGAAAAAGATGAGGAAGAAGAACAGAAAAAAACTAAGGC
TAAGGAAAAGGCAAAAGGAAAAGCAAAGAAAGAAAAGTCTGATCCTTCTAAGCTAGATCTTGAACCTTCTGATAAAAATA
AATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

82.985

89.572

0.743
  recA Bacillus subtilis subsp. subtilis str. 168

73.939

88.235

0.652
  recA Streptococcus mitis NCTC 12261

68.786

92.513

0.636
  recA Streptococcus mitis SK321

68.786

92.513

0.636
  recA Streptococcus mutans UA159

67.521

93.85

0.634
  recA Streptococcus pneumoniae R6

67.622

93.316

0.631
  recA Streptococcus pneumoniae Rx1

67.622

93.316

0.631
  recA Streptococcus pneumoniae D39

67.622

93.316

0.631
  recA Streptococcus pneumoniae TIGR4

67.622

93.316

0.631
  recA Streptococcus pyogenes NZ131

70

88.235

0.618
  recA Lactococcus lactis subsp. cremoris KW2

67.066

89.305

0.599
  recA Neisseria gonorrhoeae MS11

61.318

93.316

0.572
  recA Neisseria gonorrhoeae MS11

61.318

93.316

0.572
  recA Neisseria gonorrhoeae strain FA1090

61.318

93.316

0.572
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.942

91.444

0.548
  recA Acinetobacter baylyi ADP1

59.942

91.444

0.548
  recA Pseudomonas stutzeri DSM 10701

63.467

86.364

0.548
  recA Ralstonia pseudosolanacearum GMI1000

65.176

83.69

0.545
  recA Acinetobacter baumannii D1279779

59.238

91.176

0.54
  recA Vibrio cholerae strain A1552

62.733

86.096

0.54
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.733

86.096

0.54
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.28

87.701

0.537
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.3

86.364

0.529
  recA Glaesserella parasuis strain SC1401

61.371

85.829

0.527
  recA Helicobacter pylori 26695

58.485

88.235

0.516
  recA Helicobacter pylori strain NCTC11637

58.485

88.235

0.516

Multiple sequence alignment