Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR/comR1   Type   Regulator
Locus tag   V471_RS06605 Genome accession   NZ_CP015283
Coordinates   1413902..1414813 (-) Length   303 a.a.
NCBI ID   WP_084871305.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ATCC 25975     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1408902..1419813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V471_RS06590 - 1412797..1412993 (-) 197 Protein_1234 transposase -
  V471_RS06595 (V471_06500) - 1413026..1413538 (+) 513 WP_004182329.1 NAD(P)H-dependent oxidoreductase -
  V471_RS06600 - 1413716..1413814 (+) 99 Protein_1236 XRE family transcriptional regulator -
  V471_RS06605 (V471_06505) comR/comR1 1413902..1414813 (-) 912 WP_084871305.1 helix-turn-helix domain-containing protein Regulator
  V471_RS06610 (V471_06510) - 1414969..1415688 (-) 720 WP_004182331.1 ABC transporter permease -
  V471_RS06615 (V471_06515) - 1415681..1416517 (-) 837 WP_037600683.1 ABC transporter ATP-binding protein -
  V471_RS06620 (V471_06520) comR 1416590..1417513 (-) 924 WP_084871306.1 helix-turn-helix domain-containing protein Regulator
  V471_RS06625 (V471_06525) - 1417731..1418252 (+) 522 WP_197016868.1 RDD family protein -
  V471_RS06630 (V471_06530) - 1418313..1418756 (+) 444 WP_014634653.1 8-oxo-dGTP diphosphatase -

Sequence

Protein


Download         Length: 303 a.a.        Molecular weight: 35894.32 Da        Isoelectric Point: 4.5607

>NTDB_id=153178 V471_RS06605 WP_084871305.1 1413902..1414813(-) (comR/comR1) [Streptococcus salivarius strain ATCC 25975]
MSEEIKIEIGKRIREERERLGLTREQVCDTEEELTVKQLMRIELGRSLPTIVKLQYISDKLGVSLNYLLGETKLDIPEEY
YQAKYKLMKSPVYGDLERIKKKLKDIEELYDNYIDILPEEELLTIDIIERTLNFISEEKKEDLVEIVYEDYLNQVLKKEE
YTLNDLLLRKYYTFQCQVGDYDEEIVESFRCKLINQELQGEELVNVELLGALSTIGGIYVMHHDYRNMKTIVDKMHTIID
KTLQHAYKPAVLIFEAKYYLFYENNRDKATELYNTATVLAEAFGDQVFIKNLKMEMEKDLNIK

Nucleotide


Download         Length: 912 bp        

>NTDB_id=153178 V471_RS06605 WP_084871305.1 1413902..1414813(-) (comR/comR1) [Streptococcus salivarius strain ATCC 25975]
ATGTCTGAAGAGATTAAAATCGAGATTGGAAAAAGAATTCGTGAAGAACGTGAGCGACTTGGTTTAACACGTGAGCAAGT
TTGTGATACCGAAGAAGAATTAACAGTAAAACAACTGATGAGAATTGAGCTAGGTCGTTCTTTACCAACCATTGTCAAAC
TGCAATACATCAGTGATAAATTGGGTGTTTCCCTCAACTATTTGTTAGGTGAAACAAAACTAGACATTCCTGAGGAGTAC
TATCAGGCTAAATATAAACTCATGAAGTCTCCTGTCTATGGCGACCTCGAACGTATCAAGAAAAAGCTAAAAGATATTGA
GGAACTCTACGACAACTATATTGATATTCTACCAGAAGAAGAACTATTAACCATTGATATCATTGAAAGAACCCTGAATT
TTATATCTGAAGAGAAGAAAGAAGATCTTGTTGAGATTGTATATGAAGACTATTTGAACCAGGTATTAAAAAAAGAAGAG
TACACCTTGAATGACCTTCTGCTAAGAAAATACTATACCTTTCAATGTCAAGTTGGTGACTATGATGAAGAAATTGTTGA
AAGTTTTCGATGTAAATTAATTAATCAAGAATTACAAGGGGAAGAGCTAGTTAATGTTGAACTACTAGGGGCATTGTCAA
CTATAGGTGGAATCTATGTGATGCATCATGATTATAGAAATATGAAAACTATTGTCGATAAAATGCATACTATTATTGAT
AAGACGCTACAACATGCTTACAAACCCGCCGTACTCATTTTTGAAGCGAAATATTATCTTTTCTATGAGAACAATAGAGA
TAAAGCGACTGAGCTTTATAATACAGCTACCGTACTAGCTGAAGCTTTTGGTGATCAAGTCTTCATCAAAAATCTTAAAA
TGGAAATGGAAAAAGATTTAAACATAAAATAG

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(77-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR/comR1 Streptococcus sobrinus strain NIDR 6715-7

40.541

97.69

0.396
  comR Streptococcus salivarius strain HSISS4

40.541

97.69

0.396
  comR Streptococcus thermophilus LMG 18311

41.034

95.71

0.393
  comR Streptococcus thermophilus LMD-9

41.034

95.71

0.393
  comR Streptococcus salivarius SK126

40.845

93.729

0.383
  comR/comR2 Streptococcus sobrinus strain NIDR 6715-7

39.041

96.37

0.376

Multiple sequence alignment