Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   WX60_RS08765 Genome accession   NZ_CP012027
Coordinates   1611237..1611749 (-) Length   170 a.a.
NCBI ID   WP_048589560.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FA6140     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1606237..1616749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WX60_RS08745 (WX60_01658) - 1606998..1607480 (+) 483 WP_003694396.1 CinA family protein -
  WX60_RS08750 (WX60_01659) msrAB 1607564..1609132 (-) 1569 WP_003696288.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  WX60_RS08755 (WX60_01660) pilA 1609278..1610531 (+) 1254 WP_003696286.1 signal recognition particle-docking protein FtsY Machinery gene
  WX60_RS08760 (WX60_01661) - 1610914..1611255 (-) 342 Protein_1629 pilin -
  WX60_RS08765 (WX60_01662) pilE 1611237..1611749 (-) 513 WP_048589560.1 pilin Machinery gene
  WX60_RS08770 - 1612120..1612263 (-) 144 WP_010361012.1 hypothetical protein -
  WX60_RS15815 pilE 1612338..1612433 (-) 96 WP_407716431.1 hypothetical protein Machinery gene
  WX60_RS08775 (WX60_01663) - 1612598..1612981 (-) 384 Protein_1633 pilin -
  WX60_RS08780 (WX60_01664) - 1613099..1613503 (-) 405 Protein_1634 pilin -
  WX60_RS08785 (WX60_01665) lpxC 1613632..1614555 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  WX60_RS08790 (WX60_01666) - 1615269..1615610 (-) 342 Protein_1636 pilin -
  WX60_RS08795 (WX60_01667) pilE 1615592..1615888 (-) 297 WP_003691975.1 pilin Machinery gene
  WX60_RS08800 (WX60_01668) - 1615945..1616322 (-) 378 Protein_1638 pilin -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18417.00 Da        Isoelectric Point: 7.8069

>NTDB_id=150607 WX60_RS08765 WP_048589560.1 1611237..1611749(-) (pilE) [Neisseria gonorrhoeae strain FA6140]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNNGEWPKDNASAGVASSPTDI
KGKYVKEVEVKNGVVTATMKSDGVNKEIKNKKLSLWAKRENGSVKWFCGQPVTRDNKANDTVADAADKDKIETKHLPSTC
RDESSLPGIT

Nucleotide


Download         Length: 513 bp        

>NTDB_id=150607 WX60_RS08765 WP_048589560.1 1611237..1611749(-) (pilE) [Neisseria gonorrhoeae strain FA6140]
ATGAATACCCTTCAAAAAGGCTTTACCCTTATCGAGCTGATGATTGTGATCGCTATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCCGCCTACCAAGACTACACCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCG
TTACCGAGTATTACCTGAATAACGGCGAATGGCCGAAAGACAACGCTTCTGCCGGCGTGGCATCCTCCCCCACCGACATC
AAAGGCAAATATGTTAAAGAGGTTGAAGTTAAAAACGGCGTCGTTACCGCCACAATGAAATCAGACGGCGTAAACAAAGA
AATCAAAAACAAAAAACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGC
GCGACAACAAAGCCAACGACACCGTTGCCGACGCCGCCGACAAAGACAAAATCGAAACCAAGCACCTGCCGTCAACCTGC
CGCGATGAATCATCGTTGCCGGGTATTACCTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-161)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

85.455

97.059

0.829
  pilE Neisseria gonorrhoeae strain FA1090

83.03

97.059

0.806
  comP Acinetobacter baylyi ADP1

37.647

100

0.376

Multiple sequence alignment