Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   WX60_RS08795 Genome accession   NZ_CP012027
Coordinates   1615592..1615888 (-) Length   98 a.a.
NCBI ID   WP_003691975.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FA6140     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1610592..1620888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WX60_RS08760 (WX60_01661) - 1610914..1611255 (-) 342 Protein_1629 pilin -
  WX60_RS08765 (WX60_01662) pilE 1611237..1611749 (-) 513 WP_048589560.1 pilin Machinery gene
  WX60_RS08770 - 1612120..1612263 (-) 144 WP_010361012.1 hypothetical protein -
  WX60_RS15815 pilE 1612338..1612433 (-) 96 WP_407716431.1 hypothetical protein Machinery gene
  WX60_RS08775 (WX60_01663) - 1612598..1612981 (-) 384 Protein_1633 pilin -
  WX60_RS08780 (WX60_01664) - 1613099..1613503 (-) 405 Protein_1634 pilin -
  WX60_RS08785 (WX60_01665) lpxC 1613632..1614555 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  WX60_RS08790 (WX60_01666) - 1615269..1615610 (-) 342 Protein_1636 pilin -
  WX60_RS08795 (WX60_01667) pilE 1615592..1615888 (-) 297 WP_003691975.1 pilin Machinery gene
  WX60_RS08800 (WX60_01668) - 1615945..1616322 (-) 378 Protein_1638 pilin -
  WX60_RS08805 (WX60_01669) - 1616430..1616825 (-) 396 Protein_1639 pilin -
  WX60_RS08810 (WX60_01670) - 1616852..1617202 (-) 351 Protein_1640 pilin -
  WX60_RS08815 (WX60_01671) - 1617229..1617594 (-) 366 Protein_1641 pilin -
  WX60_RS14130 - 1618335..1618460 (+) 126 Protein_1642 IS110 family transposase -
  WX60_RS14605 - 1618796..1618927 (-) 132 WP_010356054.1 hypothetical protein -
  WX60_RS08825 (WX60_01672) - 1619009..1619698 (-) 690 WP_003690369.1 SprT family zinc-dependent metalloprotease -
  WX60_RS08830 (WX60_01673) - 1619695..1620438 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10737.19 Da        Isoelectric Point: 9.6079

>NTDB_id=150608 WX60_RS08795 WP_003691975.1 1615592..1615888(-) (pilE) [Neisseria gonorrhoeae strain FA6140]
MASSPTDIKGKYVKEVEVKNGVVTATMKSDGVNKEIKNKKLSLWAKRENGSVKWFCGQPVTRDNKANDTVADAADKDKIE
TKHLPSTCRDESSLPGIT

Nucleotide


Download         Length: 297 bp        

>NTDB_id=150608 WX60_RS08795 WP_003691975.1 1615592..1615888(-) (pilE) [Neisseria gonorrhoeae strain FA6140]
GTGGCATCCTCCCCCACCGACATCAAAGGCAAATATGTTAAAGAGGTTGAAGTTAAAAACGGCGTCGTTACCGCCACAAT
GAAATCAGACGGCGTAAACAAAGAAATCAAAAACAAAAAACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAAAT
GGTTCTGCGGACAGCCGGTTACGCGCGACAACAAAGCCAACGACACCGTTGCCGACGCCGCCGACAAAGACAAAATCGAA
ACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCGTTGCCGGGTATTACCTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(3-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

78.495

94.898

0.745
  pilE Neisseria gonorrhoeae strain FA1090

71.429

92.857

0.663

Multiple sequence alignment