Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   WX60_RS15815 Genome accession   NZ_CP012027
Coordinates   1612338..1612433 (-) Length   31 a.a.
NCBI ID   WP_407716431.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FA6140     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1607338..1617433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WX60_RS08750 (WX60_01659) msrAB 1607564..1609132 (-) 1569 WP_003696288.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  WX60_RS08755 (WX60_01660) pilA 1609278..1610531 (+) 1254 WP_003696286.1 signal recognition particle-docking protein FtsY Machinery gene
  WX60_RS08760 (WX60_01661) - 1610914..1611255 (-) 342 Protein_1629 pilin -
  WX60_RS08765 (WX60_01662) pilE 1611237..1611749 (-) 513 WP_048589560.1 pilin Machinery gene
  WX60_RS08770 - 1612120..1612263 (-) 144 WP_010361012.1 hypothetical protein -
  WX60_RS15815 pilE 1612338..1612433 (-) 96 WP_407716431.1 hypothetical protein Machinery gene
  WX60_RS08775 (WX60_01663) - 1612598..1612981 (-) 384 Protein_1633 pilin -
  WX60_RS08780 (WX60_01664) - 1613099..1613503 (-) 405 Protein_1634 pilin -
  WX60_RS08785 (WX60_01665) lpxC 1613632..1614555 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  WX60_RS08790 (WX60_01666) - 1615269..1615610 (-) 342 Protein_1636 pilin -
  WX60_RS08795 (WX60_01667) pilE 1615592..1615888 (-) 297 WP_003691975.1 pilin Machinery gene
  WX60_RS08800 (WX60_01668) - 1615945..1616322 (-) 378 Protein_1638 pilin -
  WX60_RS08805 (WX60_01669) - 1616430..1616825 (-) 396 Protein_1639 pilin -
  WX60_RS08810 (WX60_01670) - 1616852..1617202 (-) 351 Protein_1640 pilin -

Sequence

Protein


Download         Length: 31 a.a.        Molecular weight: 3265.71 Da        Isoelectric Point: 4.4788

>NTDB_id=150623 WX60_RS15815 WP_407716431.1 1612338..1612433(-) (pilE) [Neisseria gonorrhoeae strain FA6140]
MAEGQKSAVAGYCLNNGEWPENFVIPAKAGI

Nucleotide


Download         Length: 96 bp        

>NTDB_id=150623 WX60_RS15815 WP_407716431.1 1612338..1612433(-) (pilE) [Neisseria gonorrhoeae strain FA6140]
TTGGCCGAAGGTCAAAAATCAGCCGTTGCCGGGTATTGCCTGAATAACGGCGAATGGCCGGAAAACTTCGTCATTCCCGC
GAAAGCGGGAATCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

72.727

70.968

0.516
  pilE Neisseria gonorrhoeae strain FA1090

63.636

70.968

0.452

Multiple sequence alignment