Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ECTOBSL9_RS01945 Genome accession   NZ_CP011994
Coordinates   374559..375920 (+) Length   453 a.a.
NCBI ID   WP_063463641.1    Uniprot ID   -
Organism   Ectothiorhodospira sp. BSL-9     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 369559..380920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECTOBSL9_RS01925 (ECTOBSL9_0385) sucD 370359..371228 (-) 870 WP_063463638.1 succinate--CoA ligase subunit alpha -
  ECTOBSL9_RS01930 (ECTOBSL9_0386) sucC 371288..372454 (-) 1167 WP_063463639.1 ADP-forming succinate--CoA ligase subunit beta -
  ECTOBSL9_RS16325 - 372602..372844 (+) 243 WP_025280629.1 PP0621 family protein -
  ECTOBSL9_RS01940 (ECTOBSL9_0388) - 372897..374537 (+) 1641 WP_205631987.1 nitrogen regulation protein NR(II) -
  ECTOBSL9_RS01945 (ECTOBSL9_0389) pilR 374559..375920 (+) 1362 WP_063463641.1 sigma-54 dependent transcriptional regulator Regulator
  ECTOBSL9_RS01950 (ECTOBSL9_0390) pilB 376075..377790 (+) 1716 WP_063463642.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ECTOBSL9_RS01955 (ECTOBSL9_0391) pilC 377794..379002 (+) 1209 WP_063463643.1 type II secretion system F family protein Machinery gene
  ECTOBSL9_RS01960 (ECTOBSL9_0392) pilD 379011..379874 (+) 864 WP_063465949.1 A24 family peptidase Machinery gene
  ECTOBSL9_RS01965 (ECTOBSL9_0393) coaE 379874..380473 (+) 600 WP_063463644.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49810.81 Da        Isoelectric Point: 5.3737

>NTDB_id=149959 ECTOBSL9_RS01945 WP_063463641.1 374559..375920(+) (pilR) [Ectothiorhodospira sp. BSL-9]
MGIQHVLIIDDEPDIRELLEITLGRMKLHTHSAASVREAKALLGSETFDLCLTDMRLPDGDGIELVEHIQAYHPCLPVAV
ITAYGSMDTAVQALKSGAFDFVSKPVDLTTLRDLVSSALKLSAPPTMPSVDRTQDTAQGDDHLLGDAPAMRKLKATIAKL
ARSQAPVYILGESGSGKERVAQEIHRLGPRAERPFVPVNCGAIPAELMESEFFGHIKGSFTGAVTDKQGLFQAAQGGTLF
LDEVAELPLHMQVKLLRAIQERAIKPVGAAREISVDARILSASHKNLANEVESGRFRQDLYYRLNVIELKVPSLRERLED
LPRLADYILGRLAERWDEPPRCLSEAAMSQLAGYHYPGNVRELENILERAATLCDGDVIEAEDLQLPRGVESSNPGQHAS
RLSLEERLVHEERQVIQEALEAVGGDREQAAQRLGLSTRQLGFRLRRLGLESA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=149959 ECTOBSL9_RS01945 WP_063463641.1 374559..375920(+) (pilR) [Ectothiorhodospira sp. BSL-9]
ATGGGCATCCAGCACGTACTGATCATCGACGACGAACCGGACATCCGGGAACTCCTGGAGATCACCCTGGGCCGCATGAA
ACTGCACACCCACTCTGCCGCCTCGGTGCGGGAAGCCAAGGCCCTGCTGGGAAGCGAGACCTTTGATCTGTGCCTCACCG
ACATGCGTCTGCCTGACGGTGATGGCATCGAACTGGTGGAACACATCCAGGCCTACCACCCCTGCCTGCCGGTGGCGGTG
ATCACGGCCTATGGCAGCATGGATACGGCCGTGCAGGCACTCAAGTCCGGGGCCTTCGACTTCGTCTCCAAACCCGTGGA
CCTGACCACCCTGCGGGACCTGGTGAGCAGCGCCCTCAAACTCTCGGCCCCGCCCACCATGCCTTCGGTCGACCGGACTC
AGGACACGGCTCAGGGGGACGACCACCTGCTGGGCGATGCCCCGGCCATGCGCAAGCTCAAGGCCACCATCGCCAAACTG
GCCCGCAGCCAGGCCCCGGTCTACATCCTGGGGGAGTCGGGCAGTGGCAAGGAGCGGGTGGCCCAGGAAATCCACCGGCT
GGGACCCCGGGCCGAGCGCCCCTTTGTACCGGTGAACTGTGGCGCCATCCCCGCCGAACTCATGGAAAGCGAATTCTTCG
GTCATATCAAGGGCAGTTTCACCGGGGCGGTCACCGACAAGCAGGGCCTGTTTCAGGCCGCCCAGGGGGGCACCCTGTTC
CTGGACGAAGTGGCGGAACTGCCCCTGCACATGCAGGTAAAGCTGCTGCGTGCCATTCAGGAACGGGCCATCAAGCCGGT
GGGAGCGGCCCGGGAGATCTCCGTGGATGCCAGAATTCTCTCGGCCTCCCACAAGAACCTGGCCAACGAGGTGGAGAGTG
GCCGCTTCCGCCAGGACCTGTACTACCGGCTCAACGTCATCGAACTCAAGGTCCCCAGCCTGCGCGAAAGGCTTGAAGAT
CTGCCCCGACTGGCCGATTACATCCTTGGGCGGCTGGCCGAGCGCTGGGACGAGCCGCCCAGGTGCCTGAGCGAGGCAGC
CATGAGCCAGCTGGCGGGCTATCACTATCCGGGTAACGTGCGGGAACTGGAAAACATCCTGGAGCGGGCCGCCACCTTGT
GCGACGGGGATGTCATTGAGGCAGAGGATCTACAGCTCCCCCGGGGGGTGGAATCTTCAAACCCGGGCCAGCACGCCTCC
AGGCTGTCACTGGAGGAGCGCCTGGTTCACGAAGAGCGGCAGGTCATCCAGGAGGCTCTGGAGGCCGTGGGCGGTGATCG
CGAGCAGGCGGCGCAGAGGCTGGGGCTGAGCACCCGGCAACTGGGTTTTCGGCTGCGTCGACTGGGCCTTGAGAGCGCCT
GA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(412-447)

Sigma-54 interaction domain (Sigma54_activat)

(144-309)

Response regulator receiver domain (Response_reg)

(6-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.637

100

0.629
  pilR Acinetobacter baumannii strain A118

46.996

100

0.483
  luxO Vibrio cholerae strain A1552

36.996

98.455

0.364

Multiple sequence alignment