Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   L103DPR2_RS01655 Genome accession   NZ_CP011834
Coordinates   376257..377816 (-) Length   519 a.a.
NCBI ID   WP_055359461.1    Uniprot ID   A0A0P0MCN8
Organism   Limnohabitans sp. 103DPR2     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 371257..382816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L103DPR2_RS01645 (L103DPR2_00326) metH 372226..374970 (+) 2745 WP_082466678.1 methionine synthase -
  L103DPR2_RS01650 (L103DPR2_00327) - 374960..376249 (-) 1290 WP_055359460.1 MFS transporter -
  L103DPR2_RS01655 (L103DPR2_00328) comM 376257..377816 (-) 1560 WP_055359461.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  L103DPR2_RS01660 (L103DPR2_00329) - 378023..378766 (+) 744 WP_055359462.1 TorF family putative porin -
  L103DPR2_RS01665 (L103DPR2_00330) - 378791..379129 (+) 339 WP_055359463.1 P-II family nitrogen regulator -
  L103DPR2_RS01670 (L103DPR2_00331) amt 379152..380684 (+) 1533 WP_055359464.1 ammonium transporter -
  L103DPR2_RS01675 (L103DPR2_00332) - 380838..381791 (+) 954 WP_082466679.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 519 a.a.        Molecular weight: 55417.42 Da        Isoelectric Point: 9.1908

>NTDB_id=148894 L103DPR2_RS01655 WP_055359461.1 376257..377816(-) (comM) [Limnohabitans sp. 103DPR2]
MRLSLVQSRALVGLLSPGVTVEVHLANGLPSFTLVGLADVEVKEARERVRSALLNSGFEFPNNQRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDGSRLHRYEFAGELSLSGALRPVRGALVMGLALYKLANAPHLVLPPGSAEEAALVPGATVYRA
KHLREVAQPFLPVGQTSDEATSTWERLPEPVNPPQAAFSPALDLADVKGQTGAKRALEIAAAGGHSLLMVGPPGSGKSML
AHRFAGLLPDLSVDEALETASVASLAGRFRIENWLKRPTRHPHHSASAVALVGGGSPPRPGEISLAHHGVLFLDELPEFP
RSALEALREPLESGSVTISRAAHSAEFPARFQLIAAMNPCPCGYAGQVRTPGQVGPVCRCTPDQVHRYSNKISGPLLDRI
DLHIEVPSQSAAQLIHVTVGESTATIKTRCDRVRRRSLQRQGCTNQALSGPALDLHGKLGPEAAAYLTQVATHFSWSGRS
THRVLKIARTIADLAERQDILSVHIAEAVQYRRPFAGHR

Nucleotide


Download         Length: 1560 bp        

>NTDB_id=148894 L103DPR2_RS01655 WP_055359461.1 376257..377816(-) (comM) [Limnohabitans sp. 103DPR2]
ATGCGTCTTTCTTTGGTGCAAAGTAGGGCCTTGGTGGGCCTTCTATCCCCTGGCGTCACCGTTGAGGTGCATTTGGCCAA
TGGCTTGCCCAGCTTCACATTGGTGGGTTTGGCCGATGTCGAAGTCAAAGAGGCCAGGGAACGGGTACGGTCGGCTTTGT
TGAACTCAGGCTTTGAATTCCCCAACAACCAGCGAATCACGGTCAATTTAGCACCCGCTGACTTGCCCAAAGATTCAGGT
CGCTTTGATTTGCCCATCGCACTGGGCATCTTGGCGGCCAGTGGGCAAATTGACGGTAGCCGCCTGCATCGCTATGAGTT
TGCTGGCGAGTTGTCCTTGTCCGGCGCGCTGAGGCCCGTACGTGGTGCATTGGTCATGGGTTTGGCACTCTACAAGCTGG
CAAATGCGCCCCACTTGGTGTTGCCCCCTGGCAGTGCCGAGGAGGCTGCTTTGGTGCCTGGCGCCACGGTTTACCGGGCC
AAACATTTGCGAGAAGTGGCTCAGCCATTTTTGCCAGTGGGTCAAACATCCGATGAAGCCACCAGCACTTGGGAGCGCCT
GCCAGAGCCCGTGAACCCGCCTCAGGCAGCCTTCTCGCCGGCCTTGGACTTGGCCGATGTCAAAGGCCAAACAGGTGCCA
AGCGCGCCTTGGAAATTGCAGCCGCGGGTGGACACAGTTTGCTCATGGTGGGGCCTCCCGGTTCAGGCAAATCGATGTTG
GCGCATCGCTTCGCCGGCTTGCTGCCTGATTTGAGCGTGGATGAGGCTTTGGAAACAGCATCGGTGGCCAGTTTGGCTGG
CCGCTTTCGAATTGAGAATTGGCTGAAACGGCCCACACGCCACCCCCATCACTCGGCCAGTGCCGTGGCATTGGTGGGCG
GTGGCTCACCGCCCCGCCCCGGCGAAATTTCCTTGGCGCACCATGGCGTTTTGTTTTTGGATGAGTTGCCTGAATTTCCA
AGGTCCGCATTGGAGGCGTTGCGCGAACCCTTAGAGTCGGGCAGCGTCACCATTTCACGCGCAGCACATTCGGCTGAGTT
TCCAGCACGTTTTCAGTTGATTGCCGCCATGAACCCTTGCCCCTGCGGTTATGCAGGTCAGGTTCGAACGCCCGGTCAGG
TAGGTCCCGTCTGCCGTTGCACCCCCGACCAAGTGCACCGGTACAGCAACAAAATCAGCGGGCCCTTGCTTGACCGAATT
GATCTGCACATCGAGGTTCCCAGCCAAAGTGCTGCACAGTTGATCCATGTAACGGTGGGAGAAAGCACCGCCACCATCAA
GACGCGTTGTGATCGGGTGAGGCGCAGATCACTTCAACGGCAAGGCTGTACCAATCAAGCGCTCAGTGGTCCGGCGCTCG
ACCTTCATGGCAAATTAGGTCCAGAGGCTGCGGCCTACCTGACCCAAGTAGCCACGCATTTTTCGTGGAGTGGCCGAAGC
ACCCACCGCGTTCTGAAAATTGCCAGAACCATTGCCGACTTGGCAGAGCGTCAAGACATTTTGTCTGTGCACATCGCTGA
GGCTGTTCAATATCGCAGGCCGTTTGCGGGGCACCGATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(420-512)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(203-412)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0P0MCN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

50.289

100

0.503
  comM Glaesserella parasuis strain SC1401

49.615

100

0.497
  comM Vibrio cholerae strain A1552

49.416

99.037

0.489
  comM Vibrio campbellii strain DS40M4

49.027

99.037

0.486
  comM Legionella pneumophila strain ERS1305867

47.481

99.422

0.472
  comM Legionella pneumophila str. Paris

47.481

99.422

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.256

100

0.426

Multiple sequence alignment